Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   Q0G00_RS02765 Genome accession   NZ_CP129978
Coordinates   573511..575193 (+) Length   560 a.a.
NCBI ID   WP_069118890.1    Uniprot ID   -
Organism   Brochothrix thermosphacta strain DH-B18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 568511..580193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0G00_RS02740 (Q0G00_02740) xseB 569017..569253 (+) 237 WP_029091145.1 exodeoxyribonuclease VII small subunit -
  Q0G00_RS02745 (Q0G00_02745) - 569250..570131 (+) 882 WP_029091146.1 farnesyl diphosphate synthase -
  Q0G00_RS02750 (Q0G00_02750) dxs 570157..571944 (+) 1788 WP_069129465.1 1-deoxy-D-xylulose-5-phosphate synthase -
  Q0G00_RS02755 (Q0G00_02755) - 571958..572782 (+) 825 WP_069118891.1 TlyA family RNA methyltransferase -
  Q0G00_RS02760 (Q0G00_02760) argR 573031..573480 (+) 450 WP_029091149.1 transcriptional regulator ArgR -
  Q0G00_RS02765 (Q0G00_02765) recN 573511..575193 (+) 1683 WP_069118890.1 DNA repair protein RecN Machinery gene
  Q0G00_RS02770 (Q0G00_02770) buk 575338..576438 (+) 1101 WP_029091151.1 butyrate kinase -
  Q0G00_RS12725 - 576513..576593 (-) 81 WP_227002028.1 hypothetical protein -
  Q0G00_RS02775 (Q0G00_02775) gndA 576867..578282 (+) 1416 WP_029091152.1 NADP-dependent phosphogluconate dehydrogenase -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63345.83 Da        Isoelectric Point: 5.0123

>NTDB_id=856792 Q0G00_RS02765 WP_069118890.1 573511..575193(+) (recN) [Brochothrix thermosphacta strain DH-B18]
MLQELSIRHLAIIEEISLSFKKGLTVLTGETGAGKSIIIDALGLIVGGRASNDLIRHGADKADLEALFTIEKNKRAHSVL
EELGIEVEDEMVVLHRTLMRSGKNVCRINGKLVTTTNLRDVGETLLDIHSQHESQDLMNDAHHIYLIDQFAAEKIAEPLK
AYQLLYAELKNKRQEFNRFNKNEQELAQRIDMLHFQNKELEAANLVLGEEEELAAERSLLANYEKINHNVEASYDLLQGE
QSTLDQVAKVMNHLTAIQEVDGRYKEWFETVQTAYFSLSDVASDLNQELSTLEYNPEQLNNIETRMDIINQLKRKYGDSV
AEMMAYHEKISQEIEHLEHSESHSEQLQKEIEIVNEKLQLLANDLTVIRQQAAEELTVSIHDEFKELYMDKAIFKVNFET
QELGERGNNRIQFYTSTNPGEPLKPLHKIASGGELSRMMLAMKTIFSKHQGITSIIFDEVDTGVSGRVAQAIGQKIYSVS
VGSQVLCISHLPQVAAMADNHYHIEKTVSASRTRTTVSELSLDKRVAEIAMMMSGVEMTTSTEMHARELIQQSEKMKNIG

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=856792 Q0G00_RS02765 WP_069118890.1 573511..575193(+) (recN) [Brochothrix thermosphacta strain DH-B18]
ATGCTCCAAGAATTATCGATACGTCATCTTGCAATCATCGAGGAAATTTCATTATCTTTTAAAAAGGGTCTTACAGTTTT
GACTGGTGAAACAGGTGCCGGAAAATCAATTATTATTGATGCATTGGGACTTATTGTTGGTGGTCGAGCATCGAACGATT
TAATCCGACATGGTGCAGATAAAGCCGATTTAGAAGCATTGTTTACCATTGAAAAAAATAAGCGTGCCCATTCTGTTCTA
GAAGAATTAGGGATTGAAGTCGAGGATGAGATGGTCGTTTTACATCGAACATTGATGAGAAGTGGTAAAAATGTCTGTCG
AATCAATGGGAAATTAGTGACAACAACTAATTTGCGTGATGTAGGCGAGACGTTATTAGATATTCATTCCCAACATGAGA
GTCAAGATCTAATGAATGATGCCCATCATATCTATTTAATAGATCAGTTTGCAGCAGAAAAAATAGCTGAACCTTTAAAA
GCATACCAATTACTCTATGCCGAGTTGAAAAATAAACGTCAAGAATTTAATCGTTTTAATAAAAACGAACAAGAATTGGC
ACAACGAATTGATATGTTACACTTTCAAAATAAAGAATTAGAAGCAGCTAATCTCGTATTAGGTGAAGAAGAAGAGTTGG
CAGCAGAACGTTCGTTATTGGCAAATTATGAAAAAATAAATCATAATGTTGAAGCAAGTTATGACTTATTACAAGGTGAG
CAGTCAACGTTAGATCAAGTAGCAAAAGTGATGAATCATTTAACTGCAATTCAAGAAGTTGATGGACGTTACAAAGAATG
GTTTGAAACAGTGCAAACTGCTTATTTCAGCTTATCCGATGTTGCGAGCGATTTAAATCAAGAACTGTCAACATTAGAAT
ATAATCCTGAGCAATTAAATAATATAGAAACACGGATGGATATCATCAACCAATTAAAACGTAAATATGGTGATTCAGTT
GCTGAAATGATGGCTTACCATGAAAAAATAAGCCAAGAAATTGAACACTTAGAACATAGTGAGTCACACTCAGAACAATT
GCAAAAAGAAATCGAAATCGTGAATGAGAAGTTACAACTCTTAGCGAATGATTTAACCGTTATACGCCAGCAGGCAGCTG
AAGAGTTAACTGTATCAATTCATGATGAATTTAAAGAACTTTACATGGATAAAGCAATTTTTAAAGTGAATTTTGAAACA
CAAGAGTTAGGTGAGCGCGGTAATAATCGTATTCAATTCTATACATCTACTAACCCTGGTGAACCTTTGAAACCTTTGCA
TAAAATTGCATCAGGTGGGGAATTGTCACGGATGATGTTAGCAATGAAAACCATCTTTTCTAAGCATCAAGGTATTACAA
GCATCATTTTTGATGAAGTTGATACCGGTGTTAGCGGTCGAGTGGCACAAGCGATTGGTCAAAAGATATACTCTGTGTCA
GTAGGATCACAAGTGTTGTGTATTTCACATTTACCACAGGTTGCAGCAATGGCAGACAACCATTATCATATTGAAAAAAC
TGTCTCTGCATCACGTACACGTACGACGGTTTCTGAACTGTCGTTGGATAAACGTGTTGCTGAAATAGCGATGATGATGA
GTGGTGTTGAAATGACAACTTCAACTGAGATGCATGCACGTGAACTGATCCAACAATCAGAAAAAATGAAGAATATTGGC
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

47.569

100

0.489