Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QYS49_RS02200 Genome accession   NZ_CP129971
Coordinates   505289..506653 (+) Length   454 a.a.
NCBI ID   WP_308349998.1    Uniprot ID   A0AA51NBK0
Organism   Marivirga salinae isolate BDSF4-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 500289..511653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYS49_RS02170 (QYS49_07045) - 500328..501281 (-) 954 WP_308349992.1 MlaD family protein -
  QYS49_RS02175 (QYS49_07040) - 501289..502047 (-) 759 WP_308349993.1 ATP-binding cassette domain-containing protein -
  QYS49_RS02180 (QYS49_07035) - 502064..502834 (-) 771 WP_308349994.1 ABC transporter permease -
  QYS49_RS02185 (QYS49_07030) - 503080..503523 (-) 444 WP_308349995.1 Hsp20/alpha crystallin family protein -
  QYS49_RS02190 (QYS49_32530) - 503701..504138 (-) 438 WP_308349996.1 hypothetical protein -
  QYS49_RS02195 (QYS49_32535) - 504179..504934 (-) 756 WP_308349997.1 SDR family oxidoreductase -
  QYS49_RS02200 (QYS49_07015) radA 505289..506653 (+) 1365 WP_308349998.1 DNA repair protein RadA Machinery gene
  QYS49_RS02205 (QYS49_07010) - 506828..507430 (+) 603 WP_308349999.1 DUF2179 domain-containing protein -
  QYS49_RS02210 (QYS49_07005) - 507626..508030 (+) 405 WP_308350000.1 DUF4783 domain-containing protein -
  QYS49_RS02215 (QYS49_07000) - 508228..508581 (+) 354 WP_308350001.1 DUF4783 domain-containing protein -
  QYS49_RS02220 (QYS49_06995) - 508640..508843 (-) 204 WP_308350002.1 PspC domain-containing protein -
  QYS49_RS02225 (QYS49_32540) - 509020..510324 (+) 1305 WP_308350003.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49424.73 Da        Isoelectric Point: 6.6081

>NTDB_id=856772 QYS49_RS02200 WP_308349998.1 505289..506653(+) (radA) [Marivirga salinae isolate BDSF4-3]
MAKVKSAYFCQECGHESPKWAGKCPSCGQWNTFVEEVVTKEKSSSGYQSSSKRANKPVAIQEVESTSEARIKVADRELSR
VLGGGIVPGSLVLIGGEPGIGKSTLMLQIALQLSNLKVLYVSGEESAQQIKMRADRMEHDSKNCFILTETHTADIFREVE
ALGPDLLVIDSIQTLHSPKIESAAGSVGQVKECTAELMRFAKENKIPVFLIGHITKDGAIAGPKVLEHMVDAVLQFEGDR
HLTYRILRTTKNRFGSTNELGIYEMMQNGLRQVSNPSEILISQKDKDSSGTAIGATLEGNRPLLIEIQALVSPATYGTPQ
RSATGYDNKRLNMLLAVLEKRGGFRLGIQDVFLNIAGGVRVEDPAIDLAVCVAIISSLEEIPLSSKTCVAAEVGLSGEIR
AVNRIENRIAEAEKLGFTEILVSKFSMKGVDTSRYNIEIKTFSQLGEVVSYLFG

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=856772 QYS49_RS02200 WP_308349998.1 505289..506653(+) (radA) [Marivirga salinae isolate BDSF4-3]
TTGGCAAAAGTTAAATCAGCATATTTCTGTCAGGAATGCGGACATGAATCACCTAAATGGGCTGGAAAATGTCCTTCTTG
CGGGCAGTGGAATACTTTCGTGGAGGAGGTAGTGACAAAAGAAAAATCTTCCAGTGGTTATCAATCATCTAGTAAAAGAG
CCAATAAACCCGTTGCTATTCAAGAGGTAGAAAGCACGAGTGAAGCAAGAATTAAAGTAGCCGATCGTGAACTTAGCCGA
GTTTTAGGAGGGGGAATTGTACCTGGTTCATTGGTTTTAATTGGCGGAGAGCCCGGTATAGGGAAATCTACTTTAATGCT
TCAGATTGCCCTTCAACTTTCTAATCTTAAAGTGCTATATGTAAGCGGTGAAGAAAGTGCTCAGCAAATTAAAATGCGAG
CAGACAGAATGGAGCATGATTCCAAAAATTGCTTTATCCTCACCGAAACCCATACTGCTGATATTTTCAGGGAAGTAGAA
GCTTTAGGTCCAGATTTATTGGTGATTGATTCCATCCAAACTTTACATTCCCCAAAAATTGAATCTGCAGCAGGAAGTGT
GGGCCAGGTGAAAGAATGTACAGCGGAACTGATGCGCTTTGCCAAAGAAAATAAAATCCCAGTATTTCTAATTGGGCACA
TCACAAAAGATGGAGCAATTGCAGGACCTAAAGTTTTGGAGCATATGGTGGATGCAGTTTTACAATTTGAAGGGGATCGT
CATCTTACTTACCGCATTTTAAGGACTACCAAAAACAGATTTGGCTCTACTAATGAATTGGGCATTTACGAAATGATGCA
AAACGGATTGCGTCAAGTTAGCAATCCCTCCGAAATATTAATATCACAAAAAGATAAAGACAGTAGTGGAACCGCAATTG
GGGCTACCTTAGAAGGCAACCGTCCTCTTTTAATTGAAATCCAAGCCTTGGTGAGCCCTGCCACTTATGGTACTCCTCAG
CGATCTGCCACGGGCTATGACAACAAAAGATTGAACATGTTGTTGGCAGTTTTGGAAAAAAGAGGGGGATTTCGATTAGG
CATCCAAGACGTATTTCTAAATATTGCAGGAGGAGTTCGTGTGGAAGACCCTGCTATAGATTTGGCTGTATGTGTGGCCA
TTATTTCTTCCTTGGAGGAAATTCCATTATCATCAAAAACTTGCGTTGCTGCTGAGGTAGGTTTGAGTGGAGAAATCCGT
GCAGTAAACCGAATTGAAAACCGAATAGCAGAAGCAGAAAAATTAGGCTTTACGGAAATATTGGTTTCCAAATTTAGTAT
GAAAGGAGTCGATACTTCTCGCTATAATATTGAAATTAAGACCTTTAGTCAGCTAGGAGAGGTAGTAAGCTATTTGTTCG
GTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(340-424)

AAA domain (AAA_25)

(62-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis NCTC 12261

51.762

100

0.518
  radA Streptococcus mitis SK321

51.762

100

0.518
  radA Streptococcus pneumoniae Rx1

51.542

100

0.515
  radA Streptococcus pneumoniae TIGR4

51.542

100

0.515
  radA Streptococcus pneumoniae D39

51.542

100

0.515
  radA Streptococcus pneumoniae R6

51.542

100

0.515
  radA Bacillus subtilis subsp. subtilis str. 168

50.655

100

0.511