Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QYC40_RS01020 Genome accession   NZ_CP129963
Coordinates   236788..238176 (-) Length   462 a.a.
NCBI ID   WP_301991901.1    Uniprot ID   -
Organism   Sphingobacterium sp. BN32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 231788..243176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC40_RS01000 (QYC40_01000) - 233345..233923 (+) 579 WP_149527374.1 LemA family protein -
  QYC40_RS01005 (QYC40_01005) - 234083..234517 (+) 435 WP_301991898.1 TPM domain-containing protein -
  QYC40_RS01010 (QYC40_01010) - 234522..235355 (+) 834 WP_301991899.1 YgcG family protein -
  QYC40_RS01015 (QYC40_01015) - 235402..236529 (+) 1128 WP_301991900.1 TlpA disulfide reductase family protein -
  QYC40_RS01020 (QYC40_01020) radA 236788..238176 (-) 1389 WP_301991901.1 DNA repair protein RadA Machinery gene
  QYC40_RS01025 (QYC40_01025) - 238246..238752 (+) 507 WP_301991902.1 RNA polymerase sigma factor -
  QYC40_RS01030 (QYC40_01030) - 238752..239393 (+) 642 WP_301991904.1 hypothetical protein -
  QYC40_RS01035 (QYC40_01035) - 239435..240601 (-) 1167 WP_301991905.1 dipeptidase -
  QYC40_RS01040 (QYC40_01040) - 240601..242331 (-) 1731 WP_301991907.1 serine hydrolase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50715.98 Da        Isoelectric Point: 6.5071

>NTDB_id=856724 QYC40_RS01020 WP_301991901.1 236788..238176(-) (radA) [Sphingobacterium sp. BN32]
MAKTKSAYFCQSCGYDSPKWLGQCPSCKQWNTFVEEVVEKSSSRVPEWRSTASSKADTKRANKAAIIHEIVYSEEQRIVT
PDKEFNRVLGGGIVPGSLVLIGGEPGIGKSTLMLQLALTVSHVKTLYISGEESEQQIKMRAERLVQTSNANCYILTETSM
QNIFKQIDQVQPNLLVIDSIQTLHSAQIESAPGSVSQVRECTAELLRFAKETNTPVFIVGHITKDGSIAGPKVLEHMVDT
VLQFEGDRNHVYRILRAVKNRFGSSSELGIYEMQGSGLREVSNPSEIMLSQREEQVSGTAVAAMLEGMRPLMIEVQALVS
NSAYGTPQRSSTGFDTKRLNMLLAVLEKRFGFRLSAQDVFLNIAGGIRVEDPAIDLAVVAAIISSQQDIPLGSNITFAGE
VGLSGEIRAVNRIEQRIQEAEKLGFGQIFISKYNTKGLDAKKYDIAIRPVATLEDVFSALFG

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=856724 QYC40_RS01020 WP_301991901.1 236788..238176(-) (radA) [Sphingobacterium sp. BN32]
ATGGCTAAAACTAAATCGGCATACTTCTGCCAATCCTGTGGATACGACTCGCCTAAATGGTTAGGACAATGTCCTTCTTG
CAAGCAATGGAATACTTTTGTTGAAGAAGTGGTTGAGAAATCTTCTTCCCGAGTACCCGAATGGCGGAGTACCGCCAGTT
CGAAGGCAGATACGAAGCGGGCAAACAAGGCCGCTATCATCCATGAAATTGTCTATTCCGAGGAGCAGCGCATCGTTACT
CCCGATAAAGAATTCAACCGCGTCTTAGGCGGAGGAATTGTTCCGGGCTCACTGGTCTTGATCGGTGGAGAACCAGGAAT
TGGTAAATCTACCTTGATGCTTCAATTAGCCCTTACGGTCTCCCATGTGAAAACATTATATATCTCGGGGGAGGAAAGCG
AGCAGCAGATAAAGATGCGCGCTGAACGCCTCGTTCAGACCTCCAATGCGAACTGCTACATCCTGACAGAGACATCGATG
CAGAACATCTTTAAACAGATCGACCAGGTACAGCCAAACCTATTGGTAATTGACTCTATACAGACGCTACATTCTGCACA
GATTGAATCAGCGCCGGGCTCTGTATCGCAAGTGCGCGAGTGTACTGCAGAGCTGCTTCGCTTTGCGAAGGAAACCAATA
CTCCCGTGTTTATTGTGGGCCATATCACGAAGGATGGCTCAATCGCGGGCCCAAAGGTATTAGAGCACATGGTGGATACC
GTCTTGCAATTTGAAGGCGACAGAAACCATGTCTACCGAATCCTACGCGCAGTAAAAAACCGCTTCGGTTCATCATCAGA
GCTAGGAATATACGAGATGCAAGGCTCCGGGTTACGTGAGGTCTCGAATCCTTCGGAAATCATGTTGTCGCAACGCGAAG
AGCAGGTGAGCGGTACAGCAGTTGCAGCTATGTTAGAAGGCATGCGCCCCTTAATGATCGAAGTGCAGGCCTTAGTTTCT
AATTCAGCATACGGAACCCCACAAAGGAGCTCTACGGGATTCGATACCAAACGCCTGAATATGCTGTTGGCTGTATTAGA
AAAACGCTTCGGCTTCCGCCTTAGCGCACAGGACGTCTTCCTGAATATTGCCGGCGGAATACGCGTCGAAGACCCCGCAA
TTGACCTCGCCGTCGTTGCTGCAATCATCTCCTCACAACAAGATATCCCCCTAGGCTCTAACATCACCTTCGCCGGTGAA
GTAGGCCTCTCCGGTGAGATACGCGCCGTAAATCGAATCGAACAACGCATACAAGAAGCCGAAAAACTAGGCTTCGGACA
AATATTCATCTCTAAATACAACACCAAAGGCCTAGACGCCAAGAAATACGATATCGCCATTCGCCCAGTCGCAACGCTGG
AAGATGTGTTTAGTGCTTTATTTGGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(348-434)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(77-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

54.505

96.104

0.524
  radA Streptococcus pneumoniae Rx1

51.078

100

0.513
  radA Streptococcus pneumoniae D39

51.078

100

0.513
  radA Streptococcus pneumoniae R6

51.078

100

0.513
  radA Streptococcus pneumoniae TIGR4

51.078

100

0.513
  radA Streptococcus mitis NCTC 12261

51.078

100

0.513
  radA Streptococcus mitis SK321

50.862

100

0.511