Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V9Z47_RS09770 Genome accession   NZ_CP146670
Coordinates   2019591..2020220 (+) Length   209 a.a.
NCBI ID   WP_000839148.1    Uniprot ID   -
Organism   Escherichia coli strain MS 21-1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2014591..2025220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z47_RS09750 (V9Z47_09750) ycbZ 2014980..2016740 (-) 1761 WP_000156477.1 Lon protease family protein -
  V9Z47_RS09755 (V9Z47_09755) matP 2016926..2017378 (+) 453 WP_000877175.1 macrodomain Ter protein MatP -
  V9Z47_RS09760 (V9Z47_09760) ompA 2017454..2018506 (-) 1053 WP_000750418.1 porin OmpA -
  V9Z47_RS09765 (V9Z47_09765) sulA 2018863..2019372 (-) 510 WP_000288705.1 SOS-induced cell division inhibitor SulA -
  V9Z47_RS09770 (V9Z47_09770) sxy/tfoX 2019591..2020220 (+) 630 WP_000839148.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V9Z47_RS09775 (V9Z47_09775) yccS 2020183..2022345 (-) 2163 WP_000875041.1 YccS family putative transporter -
  V9Z47_RS09780 (V9Z47_09780) yccF 2022355..2022801 (-) 447 WP_001261235.1 YccF domain-containing protein -
  V9Z47_RS09785 (V9Z47_09785) helD 2022924..2024978 (+) 2055 WP_016235588.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24104.93 Da        Isoelectric Point: 9.2180

>NTDB_id=856709 V9Z47_RS09770 WP_000839148.1 2019591..2020220(+) (sxy/tfoX) [Escherichia coli strain MS 21-1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEGGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=856709 V9Z47_RS09770 WP_000839148.1 2019591..2020220(+) (sxy/tfoX) [Escherichia coli strain MS 21-1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGGGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995