Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QUE58_RS19080 Genome accession   NZ_AP027423
Coordinates   3408557..3409072 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain EC261 isolate EC261     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3403557..3414072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE58_RS19055 (MUTS7_36620) ygaZ 3403956..3404693 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  QUE58_RS19060 (MUTS7_36630) ygaH 3404683..3405018 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  QUE58_RS19065 (MUTS7_36640) emrR 3405109..3405639 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  QUE58_RS19070 (MUTS7_36650) emrA 3405766..3406938 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  QUE58_RS19075 (MUTS7_36660) emrB 3406955..3408493 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  QUE58_RS19080 (MUTS7_36670) luxS 3408557..3409072 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  QUE58_RS19085 (MUTS7_36680) gshA 3409222..3410778 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  QUE58_RS19090 (MUTS7_36690) yqaA 3410851..3411279 (-) 429 WP_001287457.1 YqaA family protein -
  QUE58_RS19095 (MUTS7_36700) yqaB 3411276..3411842 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  QUE58_RS19125 (MUTS7_36710) csrA 3413435..3413620 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=85668 QUE58_RS19080 WP_001130207.1 3408557..3409072(-) (luxS) [Escherichia coli strain EC261 isolate EC261]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=85668 QUE58_RS19080 WP_001130207.1 3408557..3409072(-) (luxS) [Escherichia coli strain EC261 isolate EC261]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment