Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V9Z40_RS13855 Genome accession   NZ_CP146667
Coordinates   2843329..2843958 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0H2V5S2
Organism   Escherichia coli strain MS 16-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2838329..2848958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z40_RS13840 (V9Z40_13840) helD 2838571..2840625 (-) 2055 WP_001313718.1 DNA helicase IV -
  V9Z40_RS13845 (V9Z40_13845) yccF 2840748..2841194 (+) 447 WP_001261236.1 YccF domain-containing protein -
  V9Z40_RS13850 (V9Z40_13850) yccS 2841204..2843366 (+) 2163 WP_000875041.1 YccS family putative transporter -
  V9Z40_RS13855 (V9Z40_13855) sxy/tfoX 2843329..2843958 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V9Z40_RS13860 (V9Z40_13860) sulA 2844177..2844686 (+) 510 WP_000288723.1 SOS-induced cell division inhibitor SulA -
  V9Z40_RS13865 (V9Z40_13865) ompA 2845042..2846082 (+) 1041 WP_001313715.1 porin OmpA -
  V9Z40_RS13870 (V9Z40_13870) matP 2846160..2846612 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  V9Z40_RS13875 (V9Z40_13875) ycbZ 2846798..2848558 (+) 1761 WP_000156468.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=856639 V9Z40_RS13855 WP_000839136.1 2843329..2843958(-) (sxy/tfoX) [Escherichia coli strain MS 16-3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=856639 V9Z40_RS13855 WP_000839136.1 2843329..2843958(-) (sxy/tfoX) [Escherichia coli strain MS 16-3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTAACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2V5S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99