Detailed information NTG0856621

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QZL45_RS11590
• Genome accession: NZ_CP129944
• Coordinates: 2490956..2491942 (-)
• Length: 328 a.a.
• NCBI ID: WP_020429689.1
• Uniprot ID: A0AAX2LR86
• Organism: Vibrio fluvialis strain I7A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2485956..2496942

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZL45_RS11570	recX	2486000..2486458 (-)	459	WP_047459347.1	recombination regulator RecX	-
QZL45_RS11575	recA	2486528..2487580 (-)	1053	WP_020330433.1	recombinase RecA	Machinery gene
QZL45_RS11580	pncC	2487753..2488241 (-)	489	WP_020330432.1	nicotinamide-nucleotide amidase	-
QZL45_RS11585	mutS	2488326..2490887 (+)	2562	WP_172557967.1	DNA mismatch repair protein MutS	-
QZL45_RS11590	rpoS	2490956..2491942 (-)	987	WP_020429689.1	RNA polymerase sigma factor RpoS	Regulator
QZL45_RS11595	nlpD	2492014..2492949 (-)	936	WP_024374199.1	murein hydrolase activator NlpD	-
QZL45_RS11600	-	2492949..2493575 (-)	627	WP_047459356.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QZL45_RS11605	surE	2493568..2494335 (-)	768	WP_020330427.1	5'/3'-nucleotidase SurE	-
QZL45_RS11610	truD	2494328..2495374 (-)	1047	WP_024374198.1	tRNA pseudouridine(13) synthase TruD	-
QZL45_RS11615	ispF	2495406..2495882 (-)	477	WP_020330425.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QZL45_RS11620	ispD	2495885..2496595 (-)	711	WP_020429679.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QZL45_RS11625	ftsB	2496592..2496873 (-)	282	WP_020330423.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37678.46 Da
• Isoelectric Point: 4.4184

>NTDB_id=856621 QZL45_RS11590 WP_020429689.1 2490956..2491942(-) (rpoS) [Vibrio fluvialis strain I7A]
MSISNTATKVEEFDFDPETANLAEVEEELATNNDQSEEIREEFDASTKSLDATQMYLSEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAVELDKPVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDINNSD
PEVSTQDDDIRDSLVAWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILMKQGLNME
SLFNVEND

Nucleotide

• Length: 987 bp

>NTDB_id=856621 QZL45_RS11590 WP_020429689.1 2490956..2491942(-) (rpoS) [Vibrio fluvialis strain I7A]
ATGAGTATCAGCAATACAGCCACTAAAGTCGAAGAGTTTGATTTTGATCCTGAAACAGCGAATCTTGCTGAGGTCGAAGA
AGAACTTGCTACCAATAATGACCAGTCAGAAGAGATTCGTGAAGAGTTTGACGCTTCAACGAAAAGTCTCGATGCAACTC
AGATGTATCTGAGTGAGATTGGTTTCTCACCACTATTAACCGCCGAAGAAGAAGTGCTCTACGCTCGCCGTGCTCTGCGT
GGCGATGAAGCTGCGCGCAAACGCATGATCGAGAGTAACTTACGTCTGGTGGTCAAGATTTCCCGCCGTTATAGCAATCG
TGGTCTGGCACTGCTTGACCTGATTGAAGAGGGTAACCTCGGCCTGATTCGTGCGGTAGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTTTCGACTTACGCCACCTGGTGGATTCGTCAGACCATTGAACGTGCGCTGATGAACCAAACCCGCACCATT
CGTTTACCGATTCATGTGGTGAAAGAGTTAAATATTTACCTGCGTACTGCACGTGAGCTGTCTCAGAAACTGGACCACGA
ACCAACCGCAGAAGAAATAGCGGTTGAACTGGATAAGCCAGTGGATGACGTCAGCAAAATGCTGCGCCTGAATGAGCGCA
TCAGCTCTGTGGACACTCCGATTGGCGGTGACGGTGATAAGGCGCTGCTGGATATCATTCCGGACATCAACAACTCTGAT
CCTGAAGTCTCCACGCAAGATGACGACATTCGTGATTCGTTGGTGGCTTGGCTGGATGAGCTCAATCCGAAACAGAAAGA
AGTGCTGGCACGCCGTTTTGGCTTGTTGGGCTATGAACCTTCGACGCTGGAAGAAGTGGGCCGCGAGATTAATCTGACTC
GTGAACGTGTACGCCAAATTCAGGTTGAAGGTCTGCGACGTCTGAGAGAGATCCTGATGAAACAGGGCCTGAACATGGAA
TCGCTGTTCAACGTGGAAAACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	87.126	100	0.887