Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QZL45_RS11470 Genome accession   NZ_CP129944
Coordinates   2469522..2470040 (-) Length   172 a.a.
NCBI ID   WP_020330449.1    Uniprot ID   S7I1E9
Organism   Vibrio fluvialis strain I7A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2464522..2475040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL45_RS11445 rimM 2464644..2465198 (-) 555 WP_020330455.1 ribosome maturation factor RimM -
  QZL45_RS11450 rpsP 2465226..2465474 (-) 249 WP_020330454.1 30S ribosomal protein S16 -
  QZL45_RS11455 ffh 2465700..2467082 (-) 1383 WP_020330453.1 signal recognition particle protein -
  QZL45_RS11460 - 2467295..2468089 (+) 795 WP_020330452.1 inner membrane protein YpjD -
  QZL45_RS11465 - 2468179..2469453 (+) 1275 WP_020330450.1 HlyC/CorC family transporter -
  QZL45_RS11470 luxS 2469522..2470040 (-) 519 WP_020330449.1 S-ribosylhomocysteine lyase Regulator
  QZL45_RS11475 - 2470066..2470668 (-) 603 WP_158124314.1 hypothetical protein -
  QZL45_RS11480 gshA 2470670..2472235 (-) 1566 WP_047456939.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18909.87 Da        Isoelectric Point: 5.5627

>NTDB_id=856618 QZL45_RS11470 WP_020330449.1 2469522..2470040(-) (luxS) [Vibrio fluvialis strain I7A]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSEKGIHTLEHLYAGFMRAHLNGANVEIIDISP
MGCRTGFYMSLIGAPSEEQVAAAWLAAMQDVLKVESQDKIPELNEYQCGTAAMHSLTEAKAIAEKVIAAGIQVNKNDELA
LPESMLKELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=856618 QZL45_RS11470 WP_020330449.1 2469522..2470040(-) (luxS) [Vibrio fluvialis strain I7A]
ATGCCATTATTAGACAGTTTTACCGTCGATCACACTCGCATGAACGCACCGGCTGTGCGTGTTGCGAAAACCATGCAAAC
GCCAAAAGGCGACACCATTACGGTGTTTGACCTGCGTTTTACGATGCCAAACAAAGACATTCTGTCAGAGAAAGGGATTC
ACACTCTTGAGCATCTTTACGCGGGCTTTATGCGCGCGCATCTGAACGGTGCGAACGTGGAAATCATCGATATTTCCCCA
ATGGGCTGCCGTACAGGTTTTTACATGAGCCTGATTGGTGCGCCAAGTGAAGAACAGGTGGCTGCCGCTTGGTTGGCTGC
AATGCAAGATGTTCTGAAGGTGGAAAGTCAGGACAAGATTCCTGAACTGAACGAATACCAGTGTGGTACGGCAGCGATGC
ACTCGCTGACGGAAGCTAAAGCGATTGCAGAGAAAGTGATTGCCGCAGGCATTCAGGTCAACAAGAATGATGAACTGGCA
CTGCCAGAGTCAATGTTGAAAGAGCTGAAAGTACACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB S7I1E9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

91.279

100

0.913