Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   QZL45_RS07830 Genome accession   NZ_CP129944
Coordinates   1665690..1667114 (+) Length   474 a.a.
NCBI ID   WP_024374162.1    Uniprot ID   A0AAX2LNH1
Organism   Vibrio fluvialis strain I7A     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1660690..1672114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL45_RS07805 cobT 1660857..1661885 (-) 1029 WP_020327523.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  QZL45_RS07810 - 1661899..1662510 (-) 612 WP_222725438.1 flavin reductase family protein -
  QZL45_RS07815 - 1662895..1663578 (+) 684 WP_020432563.1 NAD(P)H-binding protein -
  QZL45_RS07820 - 1663779..1665158 (+) 1380 WP_020432565.1 L-cystine transporter -
  QZL45_RS07825 - 1665240..1665452 (-) 213 WP_075989234.1 hypothetical protein -
  QZL45_RS07830 sbcB 1665690..1667114 (+) 1425 WP_024374162.1 exodeoxyribonuclease I Machinery gene
  QZL45_RS07835 - 1667155..1667529 (+) 375 WP_020327588.1 CidA/LrgA family protein -
  QZL45_RS07840 - 1667520..1668200 (+) 681 WP_020327589.1 LrgB family protein -
  QZL45_RS07845 cdd 1668402..1669289 (+) 888 WP_020432570.1 cytidine deaminase -
  QZL45_RS07850 - 1669336..1672044 (-) 2709 WP_222763499.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54430.86 Da        Isoelectric Point: 5.1517

>NTDB_id=856607 QZL45_RS07830 WP_024374162.1 1665690..1667114(+) (sbcB) [Vibrio fluvialis strain I7A]
MQQQHQPTYFFFDYETWGTSPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPADYLPAPEAALITGIIPQKAMAQGLSEP
EFIAKIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFLDPYAWSWQNGNSRWDLLDVMRACHALRPEGIVWPENDEGFT
SFKLEHLSKANGIEHENAHDAMADVIATIELAKKVKAAQPKLFDYFFSMRHKRKLNELIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVADLAKDPQPLIDLDVDALHARLYTRHDDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAA
TIGIDRELCLANLARIRQHPEIREKLAALFGIEREFEASNDVDTQLYDGFFSPADKAAMEIIRSTKPELLGELDITFSDK
RIEPLLFRYRARNFPWTLDENDQRRWANHCRDYYETHLPDYMLNLENLVHEHESDEKKIAILKSVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=856607 QZL45_RS07830 WP_024374162.1 1665690..1667114(+) (sbcB) [Vibrio fluvialis strain I7A]
ATGCAGCAGCAACACCAGCCAACTTATTTCTTCTTTGACTACGAGACGTGGGGCACCAGCCCGGCCAAAGATCGTCCGAG
TCAGTTTGCTGGTGTACGCACAGACATGGATTTCAACATCATTGGCGAGCCTTTGGTGATCTATTGCCAACTGCCAGCGG
ATTATCTGCCAGCGCCAGAAGCCGCGCTGATTACCGGCATCATTCCACAAAAAGCGATGGCACAAGGGCTTTCAGAGCCG
GAGTTTATTGCCAAAATTCACGCAGAACTGTCGACACCCAACACCACCAGCCTGGGTTACAACAGCATTCGTTTCGACGA
TGAAGTGACACGTTATACCTGCTACCGCAACTTTCTCGACCCGTATGCCTGGAGCTGGCAAAACGGCAACTCACGTTGGG
ATCTGCTCGATGTGATGCGTGCGTGTCATGCGCTGCGCCCAGAAGGCATTGTGTGGCCGGAAAACGACGAAGGCTTTACC
AGCTTCAAACTGGAGCATTTGTCGAAAGCCAACGGCATTGAACACGAAAATGCGCACGATGCGATGGCCGACGTGATTGC
AACCATTGAACTGGCGAAGAAAGTCAAAGCAGCGCAGCCCAAACTGTTCGATTATTTCTTCTCTATGCGCCATAAGCGCA
AACTGAATGAACTGATTGATATCGTCAACATGACGCCGCTGATGCACGTGTCCGGCATGCTGGGTCGCGAGTGTCAATAC
ACCAGTTGGATTGTGCCGATAGCCTGGCACCCTACCAATCAGAACGCCGTGATTGTGGCTGATTTGGCCAAAGATCCACA
GCCGCTGATCGACTTAGATGTGGACGCTCTGCATGCACGTCTATATACCCGTCACGATGATTTAGCACCGGATGAACTGC
CTGTGCCCGTCAAACTGGTTCATCTCAATAAATGCCCGATTCTGGCACCGGCGAAAACGCTGACCGCAGAAAATGCCGCT
ACCATCGGTATTGATCGCGAATTGTGTCTGGCGAATCTGGCTCGCATTCGTCAGCATCCGGAAATTCGAGAGAAGCTGGC
AGCCCTCTTTGGCATTGAACGAGAATTTGAAGCATCGAACGATGTTGATACACAGCTCTATGATGGATTCTTCTCACCTG
CGGATAAAGCGGCGATGGAGATCATCCGTTCAACCAAACCTGAGCTGCTTGGCGAGCTGGATATTACCTTCAGCGATAAA
CGCATCGAACCGCTGCTGTTTCGCTATCGCGCACGTAACTTCCCTTGGACGCTGGATGAAAATGACCAGCGCCGCTGGGC
GAACCATTGCCGCGACTACTACGAAACACACCTGCCAGATTACATGCTGAATCTGGAAAATTTAGTTCATGAACATGAAA
GTGACGAAAAGAAAATCGCCATTTTAAAATCCGTTTACCAATACGTAGAGAAGCTAGCCTCTTAG

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

83.51

99.789

0.833