Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   QZL45_RS00485 Genome accession   NZ_CP129944
Coordinates   108456..109463 (+) Length   335 a.a.
NCBI ID   WP_055451895.1    Uniprot ID   -
Organism   Vibrio fluvialis strain I7A     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 103456..114463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL45_RS00465 metJ 103602..103919 (+) 318 WP_020329393.1 met regulon transcriptional regulator MetJ -
  QZL45_RS00470 - 103997..105274 (-) 1278 WP_024373675.1 malic enzyme-like NAD(P)-binding protein -
  QZL45_RS00475 rpmE 105486..105704 (-) 219 WP_020329395.1 50S ribosomal protein L31 -
  QZL45_RS00480 priA 105950..108151 (+) 2202 WP_308413243.1 primosomal protein N' -
  QZL45_RS00485 cytR 108456..109463 (+) 1008 WP_055451895.1 DNA-binding transcriptional regulator CytR Regulator
  QZL45_RS00490 ftsN 109593..110150 (+) 558 WP_024373673.1 cell division protein FtsN -
  QZL45_RS00495 hslV 110286..110840 (+) 555 WP_020329399.1 ATP-dependent protease subunit HslV -
  QZL45_RS00500 hslU 110882..112214 (+) 1333 Protein_89 HslU--HslV peptidase ATPase subunit -
  QZL45_RS00505 - 112303..113220 (+) 918 WP_222801594.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  QZL45_RS00510 rraA 113296..113823 (+) 528 WP_222749674.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36896.42 Da        Isoelectric Point: 6.3516

>NTDB_id=856594 QZL45_RS00485 WP_055451895.1 108456..109463(+) (cytR) [Vibrio fluvialis strain I7A]
MATMKDVAQLAGVSTATVSRALMNPEKVSASTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYYTEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQMGHKRVAQIAGPEAAVLCQFRQQGYQQALRRAGITRNPTYSISGDFTFESGAKAVRQLLALPEPPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TQLVVRESAAPPRSM

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=856594 QZL45_RS00485 WP_055451895.1 108456..109463(+) (cytR) [Vibrio fluvialis strain I7A]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCAGGCGTTTCGACGGCGACGGTCTCGCGCGCTCTGATGAATCCCGAAAA
AGTTTCAGCCTCAACCCGTAAGCGGGTCGAGGAGGCAGTTTTAGAAGCTGGCTATTCACCGAATTCTTTGGCCCGAAATC
TGCGCCGCAATGAGTCAAAAACCATTGTCGCGATAGTGCCGGATATCTGTGACCCTTATTACACAGAGATCATTCGTGGT
ATCGAAGATGCTGCGATGGAACACGGTTATCTGGTGCTGCTGGGCGACAGCGGACAGCAGAAAAAACGTGAAAGCTCATT
TGTGAACCTGGTGTTTACCAAACAAGCGGACGGCATGTTACTGCTGGGGACTGACTTGCCGTTTGATGTGAGCAAACCCG
AGCAGAAAAACCTGCCACCGATGGTGATGGCGTGTGAGTTTGCGCCGGAGCTTGAGCTACCTACGGTACACATTGATAAC
CTGACATCGGCGTTTGAAGCCGTGAACTATCTGACTCAGATGGGGCACAAACGTGTGGCACAAATCGCCGGACCGGAAGC
CGCGGTGCTGTGTCAGTTTCGTCAGCAAGGTTATCAGCAGGCGCTGCGTCGTGCGGGTATCACTCGCAATCCGACCTACA
GTATAAGTGGTGACTTTACTTTTGAGTCCGGAGCCAAAGCGGTGCGTCAATTATTGGCCCTGCCTGAGCCACCAACGGCT
ATCTTCTGTCACAACGATACCATGGCGATTGGCGCGATTCAGGAAGCGAAACGTCTGGGACTGCGCGTACCGCAGGATCT
CTCTGTGGTGGGCTTTGATGACATTCAATTCGCCCAGTACTGCGATCCACCGCTGACGACCATCTCTCAGCCTCGCTACG
AGATTGGCCGTCAGGCGATGCTGATGATGCTGGAATTGCTGCGTGGTCATGACGTGCGTGCCGGCTCACGTTTGCTGGAA
ACTCAGCTGGTGGTGCGTGAGAGCGCAGCGCCGCCTCGTTCGATGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

94.277

99.104

0.934
  cytR Vibrio parahaemolyticus RIMD 2210633

90.691

99.403

0.901