Detailed information NTG0856575

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QZL35_RS13130
• Genome accession: NZ_CP129940
• Coordinates: 2876237..2877223 (-)
• Length: 328 a.a.
• NCBI ID: WP_005380887.1
• Uniprot ID: A0A2I3CB39
• Organism: Vibrio alginolyticus strain I25B
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2871237..2882223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZL35_RS13115	recA	2871782..2872825 (-)	1044	WP_005380874.1	recombinase RecA	Machinery gene
QZL35_RS13120	pncC	2873026..2873508 (-)	483	WP_017633544.1	nicotinamide-nucleotide amidase	-
QZL35_RS13125	mutS	2873593..2876154 (+)	2562	WP_064354301.1	DNA mismatch repair protein MutS	-
QZL35_RS13130	rpoS	2876237..2877223 (-)	987	WP_005380887.1	RNA polymerase sigma factor RpoS	Regulator
QZL35_RS13135	-	2877304..2878225 (-)	922	Protein_2541	peptidoglycan DD-metalloendopeptidase family protein	-
QZL35_RS13140	-	2878239..2878865 (-)	627	WP_315867605.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QZL35_RS13145	surE	2878865..2879641 (-)	777	WP_005383788.1	5'/3'-nucleotidase SurE	-
QZL35_RS13150	truD	2879641..2880684 (-)	1044	WP_064354303.1	tRNA pseudouridine(13) synthase TruD	-
QZL35_RS13155	ispF	2880730..2881206 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QZL35_RS13160	ispD	2881203..2881928 (-)	726	WP_064354304.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QZL35_RS13165	ftsB	2881930..2882211 (-)	282	WP_005380907.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37412.31 Da
• Isoelectric Point: 4.7299

>NTDB_id=856575 QZL35_RS13130 WP_005380887.1 2876237..2877223(-) (rpoS) [Vibrio alginolyticus strain I25B]
MSISNTVTKVEEFAFDNASVKTIDNELERSSSTESKATAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=856575 QZL35_RS13130 WP_005380887.1 2876237..2877223(-) (rpoS) [Vibrio alginolyticus strain I25B]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGCATTTGACAATGCGTCAGTGAAGACCATTGATAACGAACT
CGAAAGATCATCATCCACAGAAAGCAAAGCGACTGCGCGTGAAGAATTTGACGCGAGCAGTAAAAGCTTAGATGCAACTC
AGTTGTATTTGGGCGAAATTGGCTTCTCACCTTTACTTACTGCCGAAGAAGAAGTGCTTTACGCAAGACGCGCCCTACGT
GGCGACGAAGCGGCACGCAAACGTATGATCGAAAGTAACCTACGTTTGGTTGTTAAGATTTCTCGTCGATACAGTAACCG
TGGTCTAGCACTACTCGATCTGATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTCGAAAAATTCGACCCAGAACGTG
GTTTCCGTTTCTCTACTTACGCAACGTGGTGGATCCGACAAACGATAGAGCGAGCGTTGATGAACCAAACTCGCACGATC
CGTCTACCTATCCACGTAGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCACGA
ACCGACCGCAGAAGAAATTGCTGCTCAATTAGATATTCCAGTCGAAGACGTAAGCAAAATGTTACGCCTTAATGAGCGTA
TTAGCTCTGTCGACACGCCAATCGGTGGTGACGGTGAGAAAGCGCTGCTGGATATTATTCCTGATGCAAACAACTCTGAT
CCAGAAGTTTCGACTCAAGATGACGACATCAAATCATCGTTGATTCATTGGTTAGAAGAGTTGAATCCGAAACAGAAAGA
AGTGCTTGCACGTCGCTTCGGCCTACTAGGCTACGAGCCTTCGACGCTGGAAGAAGTTGGTCGAGAGATTGGTCTGACAC
GTGAGCGAGTACGTCAAATACAAGTGGAAGGTTTACGTCGTCTTCGTGAAGTCCTAATCAAACAAGGTTTGAATATGGAA
AACTTGTTTAACGTAGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

3D structure

• AlphaFold DB: A0A2I3CB39

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.854