Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QZL35_RS12995 Genome accession   NZ_CP129940
Coordinates   2852780..2853298 (-) Length   172 a.a.
NCBI ID   WP_017820391.1    Uniprot ID   A0A2I3C9Z1
Organism   Vibrio alginolyticus strain I25B     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2847780..2858298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL35_RS12970 rimM 2847870..2848418 (-) 549 WP_005379964.1 ribosome maturation factor RimM -
  QZL35_RS12975 rpsP 2848448..2848696 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  QZL35_RS12980 ffh 2848906..2850288 (-) 1383 WP_005385423.1 signal recognition particle protein -
  QZL35_RS12985 - 2850513..2851307 (+) 795 WP_005379950.1 inner membrane protein YpjD -
  QZL35_RS12990 - 2851432..2852712 (+) 1281 WP_005379948.1 HlyC/CorC family transporter -
  QZL35_RS12995 luxS 2852780..2853298 (-) 519 WP_017820391.1 S-ribosylhomocysteine lyase Regulator
  QZL35_RS13000 - 2853383..2853988 (-) 606 WP_005379943.1 hypothetical protein -
  QZL35_RS13005 gshA 2854012..2855580 (-) 1569 WP_064354294.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19074.83 Da        Isoelectric Point: 4.8443

>NTDB_id=856572 QZL35_RS12995 WP_017820391.1 2852780..2853298(-) (luxS) [Vibrio alginolyticus strain I25B]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLKEAQQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=856572 QZL35_RS12995 WP_017820391.1 2852780..2853298(-) (luxS) [Vibrio alginolyticus strain I25B]
ATGCCTTTACTCGATAGTTTTACCGTGGACCACACTCGTATGAACGCACCCGCTGTACGAGTGGCGAAAACCATGCAGAC
CCCAAAAGGGGATACGATTACTGTTTTCGACTTACGCTTTACTGCGCCAAACAAAGACATTCTTTCTGAAAAAGGTATTC
ACACCCTAGAGCACCTTTATGCAGGCTTTATGCGTAATCACCTAAACGGTGATTCTGTTGAGATCATCGATATTTCGCCT
ATGGGTTGCCGCACAGGTTTTTACATGAGCCTGATTGGCACACCATCAGAGCAGCAAGTCGCAGATGCTTGGATTGCAGC
AATGGAAGACGTGCTGAAGGTAGAAAGTCAGAATAAGATCCCTGAACTTAACGAATACCAATGCGGCACGGCAGCAATGC
ACTCTTTAAAAGAAGCACAACAGATCGCAAAGAACATTTTGGATGCTGGTGTTTCGGTGAACAAAAATGATGAACTTGCT
TTGCCTGAGTCGATGTTAAAAGAGTTGCGCATCGACTAG

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2I3C9Z1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866