Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   QZL35_RS02060 Genome accession   NZ_CP129940
Coordinates   427422..428450 (-) Length   342 a.a.
NCBI ID   WP_257978021.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain I25B     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 422422..433450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL35_RS02030 - 422938..423369 (-) 432 WP_140362774.1 DUF2787 family protein -
  QZL35_RS02035 radC 423366..423839 (-) 474 WP_046874059.1 RadC family protein -
  QZL35_RS02040 - 424243..424467 (+) 225 WP_064353571.1 hypothetical protein -
  QZL35_RS02045 hslU 424631..425962 (-) 1332 WP_140362775.1 HslU--HslV peptidase ATPase subunit -
  QZL35_RS02050 hslV 425986..426537 (-) 552 WP_005383176.1 ATP-dependent protease subunit HslV -
  QZL35_RS02055 ftsN 426651..427199 (-) 549 WP_025998522.1 cell division protein FtsN -
  QZL35_RS02060 cytR 427422..428450 (-) 1029 WP_257978021.1 DNA-binding transcriptional regulator CytR Regulator
  QZL35_RS02065 priA 428753..430957 (-) 2205 WP_140362776.1 primosomal protein N' -
  QZL35_RS02070 rpmE 431254..431475 (+) 222 WP_005379546.1 50S ribosomal protein L31 -
  QZL35_RS02075 rpsJ 431932..432243 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  QZL35_RS02080 rplC 432258..432887 (+) 630 WP_005379555.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37710.38 Da        Isoelectric Point: 6.2471

>NTDB_id=856554 QZL35_RS02060 WP_257978021.1 427422..428450(-) (cytR) [Vibrio alginolyticus strain I25B]
MNERLKTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPY
FSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELEL
PTVHIDNLTSAFEAVNYLTQLGHKSIAQISGPDTAILCQFRQQGYQQALRRAGINKDPQYSVITEFSFDGGAKAVRKLLE
LPEPPTAIFCHCDTMAIGAIQEAKKLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLEMLKGHDVH
SGSRLLETNLVIRGSAAPPQRP

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=856554 QZL35_RS02060 WP_257978021.1 427422..428450(-) (cytR) [Vibrio alginolyticus strain I25B]
ATAAATGAGAGGTTAAAAACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCTACGGCTACGGTATCTCG
AGCCTTAATGAATCCAGAGAAGGTCTCTTCTTCTACAAGAAAGAGAGTAGAAGAAGCCGTACTTGAAGCGGGTTATTCTC
CAAACTCATTAGCGCGTAACTTACGTAGAAACGAATCAAAAACCATTGTTACTATCGTTCCCGACATCTGTGATCCTTAT
TTTTCTGAAATTATTCGCGGTATTGAAGATGCAGCCATGGAACATGGCTATCTAGTCCTTCTGGGCGATAGCGGACAACA
GAAGAAACGCGAAAGCTCTTTCGTTAATCTCGTATTTACTAAGCAGGCAGATGGAATGCTACTGCTTGGTACAGATCTAC
CATTCGATGTCAGTAAGCCAGAACAAAAGAACTTACCTCCGATGGTAATGGCGTGTGAATTTGCGCCTGAACTCGAGCTT
CCGACAGTACATATTGACAACCTGACCTCAGCATTTGAAGCGGTGAATTACCTGACCCAATTAGGTCATAAAAGCATTGC
TCAAATCTCTGGACCAGATACAGCAATATTGTGTCAGTTCCGCCAACAAGGCTACCAACAAGCCCTGCGCCGTGCCGGCA
TCAATAAAGATCCACAATATAGTGTCATTACTGAATTCTCTTTTGATGGCGGAGCAAAAGCCGTTCGTAAACTGCTCGAA
TTGCCAGAGCCACCAACGGCTATTTTCTGTCACTGTGACACAATGGCCATCGGCGCAATTCAAGAAGCGAAAAAGCTTGG
CTTACGAGTCCCGCAAGATCTCTCTGTTGTGGGCTTTGATGACATTAACTTCGCTCAGTACTGCGATCCACCGTTGACCA
CTATCTCTCAGCCTCGCTATGAGATTGGTCGACAAGCAATGCTAATGATGCTCGAGATGTTAAAAGGCCACGACGTGCAT
TCAGGCTCGCGTCTGCTTGAAACTAATCTCGTCATTCGCGGAAGTGCAGCGCCACCACAGCGCCCTTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(175-335)

Bacterial regulatory proteins, lacI family (LacI)

(10-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

97.345

99.123

0.965
  cytR Vibrio cholerae C6706

89.521

97.661

0.874