Detailed information NTG0856532

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QZL43_RS13840
• Genome accession: NZ_CP129938
• Coordinates: 2985947..2986936 (-)
• Length: 329 a.a.
• NCBI ID: WP_031813667.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain BM21A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2980947..2991936

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZL43_RS13830	-	2981764..2983110 (-)	1347	WP_140062029.1	site-specific integrase	-
QZL43_RS13835	mutS	2983283..2985868 (+)	2586	WP_308384750.1	DNA mismatch repair protein MutS	-
QZL43_RS13840	rpoS	2985947..2986936 (-)	990	WP_031813667.1	RNA polymerase sigma factor RpoS	Regulator
QZL43_RS13845	-	2987017..2987940 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
QZL43_RS13850	-	2987955..2988581 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QZL43_RS13855	surE	2988581..2989357 (-)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
QZL43_RS13860	truD	2989357..2990400 (-)	1044	WP_020841270.1	tRNA pseudouridine(13) synthase TruD	-
QZL43_RS13865	ispF	2990447..2990923 (-)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QZL43_RS13870	ispD	2990941..2991645 (-)	705	WP_020841271.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QZL43_RS13875	ftsB	2991647..2991928 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37546.35 Da
• Isoelectric Point: 4.6066

>NTDB_id=856532 QZL43_RS13840 WP_031813667.1 2985947..2986936(-) (rpoS) [Vibrio parahaemolyticus strain BM21A]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDDAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=856532 QZL43_RS13840 WP_031813667.1 2985947..2986936(-) (rpoS) [Vibrio parahaemolyticus strain BM21A]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGATGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGATGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCACAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.533	100	0.848