Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QZL43_RS13500 Genome accession   NZ_CP129938
Coordinates   2909573..2910091 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain BM21A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2904573..2915091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL43_RS13475 rimM 2904681..2905229 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  QZL43_RS13480 rpsP 2905258..2905506 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  QZL43_RS13485 ffh 2905716..2907098 (-) 1383 WP_062866932.1 signal recognition particle protein -
  QZL43_RS13490 - 2907311..2908105 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  QZL43_RS13495 - 2908231..2909511 (+) 1281 WP_005462557.1 HlyC/CorC family transporter -
  QZL43_RS13500 luxS 2909573..2910091 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  QZL43_RS13505 - 2910158..2910763 (-) 606 WP_015297256.1 hypothetical protein -
  QZL43_RS13510 gshA 2910788..2912356 (-) 1569 WP_062866931.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=856529 QZL43_RS13500 WP_005462534.1 2909573..2910091(-) (luxS) [Vibrio parahaemolyticus strain BM21A]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=856529 QZL43_RS13500 WP_005462534.1 2909573..2910091(-) (luxS) [Vibrio parahaemolyticus strain BM21A]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCGCCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884