Detailed information NTG0856522

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: QZL43_RS07105
• Genome accession: NZ_CP129938
• Coordinates: 1526265..1527686 (-)
• Length: 473 a.a.
• NCBI ID: WP_042771075.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain BM21A
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1521265..1532686

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZL43_RS07080	-	1521829..1522479 (+)	651	WP_005480776.1	thiopurine S-methyltransferase	-
QZL43_RS07085	purT	1522581..1523756 (-)	1176	WP_005480612.1	formate-dependent phosphoribosylglycinamide formyltransferase	-
QZL43_RS07090	cdd	1523904..1524791 (-)	888	WP_021453310.1	cytidine deaminase	-
QZL43_RS07095	-	1525156..1525833 (-)	678	WP_025522457.1	LrgB family protein	-
QZL43_RS07100	-	1525835..1526209 (-)	375	WP_005455074.1	CidA/LrgA family protein	-
QZL43_RS07105	sbcB	1526265..1527686 (-)	1422	WP_042771075.1	exodeoxyribonuclease I	Machinery gene
QZL43_RS07110	-	1527842..1529215 (-)	1374	WP_140283759.1	L-cystine transporter	-
QZL43_RS07115	-	1529408..1530103 (-)	696	WP_025441998.1	NAD(P)H-binding protein	-
QZL43_RS07120	cobT	1530787..1531830 (+)	1044	WP_140283757.1	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	-
QZL43_RS07125	-	1531875..1532627 (+)	753	WP_053321193.1	adenosylcobinamide-GDP ribazoletransferase	-

Sequence

Protein

• Length: 473 a.a.
• Molecular weight: 54669.04 Da
• Isoelectric Point: 5.1101

>NTDB_id=856522 QZL43_RS07105 WP_042771075.1 1526265..1527686(-) (sbcB) [Vibrio parahaemolyticus strain BM21A]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRERQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPVIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPSTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide

• Length: 1422 bp

>NTDB_id=856522 QZL43_RS07105 WP_042771075.1 1526265..1527686(-) (sbcB) [Vibrio parahaemolyticus strain BM21A]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAGCCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCTGCATTAATTACCGGCATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCAGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACTAGCCTAGGTTACAACAGCATTCGTTTTGATGA
CGAAGTCACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCTTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ACTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGTTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCAGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCGCAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCATAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAACGCCAATAC
ACCAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAATGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGTGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGCTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAAGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

• Exonuclease C-terminal (Exonuc_X-T_C) (210-469)

• Exonuclease (RNase_T) (11-190)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	79.915	100	0.799