Detailed information NTG0856489

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QZL40_RS13360
• Genome accession: NZ_CP129936
• Coordinates: 2846291..2847280 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus strain I13A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2841291..2852280

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZL40_RS13345	recA	2841840..2842883 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
QZL40_RS13350	pncC	2843084..2843566 (-)	483	WP_005493945.1	nicotinamide-nucleotide amidase	-
QZL40_RS13355	mutS	2843651..2846212 (+)	2562	WP_308390581.1	DNA mismatch repair protein MutS	-
QZL40_RS13360	rpoS	2846291..2847280 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
QZL40_RS13365	-	2847361..2848284 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
QZL40_RS13370	-	2848299..2848925 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QZL40_RS13375	surE	2848925..2849701 (-)	777	WP_021450028.1	5'/3'-nucleotidase SurE	-
QZL40_RS13380	truD	2849701..2850744 (-)	1044	WP_191686266.1	tRNA pseudouridine(13) synthase TruD	-
QZL40_RS13385	ispF	2850791..2851267 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QZL40_RS13390	ispD	2851285..2851989 (-)	705	WP_025442246.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QZL40_RS13395	ftsB	2851991..2852272 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=856489 QZL40_RS13360 WP_005478537.1 2846291..2847280(-) (rpoS) [Vibrio parahaemolyticus strain I13A]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=856489 QZL40_RS13360 WP_005478537.1 2846291..2847280(-) (rpoS) [Vibrio parahaemolyticus strain I13A]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851