Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QZL40_RS13230 Genome accession   NZ_CP129936
Coordinates   2824177..2824695 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus strain I13A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2819177..2829695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL40_RS13205 rimM 2819285..2819833 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  QZL40_RS13210 rpsP 2819862..2820110 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  QZL40_RS13215 ffh 2820320..2821702 (-) 1383 WP_005462555.1 signal recognition particle protein -
  QZL40_RS13220 - 2821915..2822709 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  QZL40_RS13225 - 2822835..2824115 (+) 1281 WP_005462557.1 HlyC/CorC family transporter -
  QZL40_RS13230 luxS 2824177..2824695 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  QZL40_RS13235 - 2824762..2825367 (-) 606 WP_015297256.1 hypothetical protein -
  QZL40_RS13240 gshA 2825392..2826960 (-) 1569 WP_102600358.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=856486 QZL40_RS13230 WP_005462534.1 2824177..2824695(-) (luxS) [Vibrio parahaemolyticus strain I13A]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=856486 QZL40_RS13230 WP_005462534.1 2824177..2824695(-) (luxS) [Vibrio parahaemolyticus strain I13A]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884