Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   QZL40_RS07075 Genome accession   NZ_CP129936
Coordinates   1515750..1517171 (-) Length   473 a.a.
NCBI ID   WP_005454911.1    Uniprot ID   A0A0L8TA80
Organism   Vibrio parahaemolyticus strain I13A     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1510750..1522171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL40_RS07050 - 1511325..1511963 (+) 639 WP_322534648.1 thiopurine S-methyltransferase -
  QZL40_RS07055 purT 1512065..1513240 (-) 1176 WP_241643464.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  QZL40_RS07060 cdd 1513389..1514276 (-) 888 WP_015296604.1 cytidine deaminase -
  QZL40_RS07065 - 1514641..1515318 (-) 678 WP_005454891.1 LrgB family protein -
  QZL40_RS07070 - 1515320..1515694 (-) 375 WP_005455074.1 CidA/LrgA family protein -
  QZL40_RS07075 sbcB 1515750..1517171 (-) 1422 WP_005454911.1 exodeoxyribonuclease I Machinery gene
  QZL40_RS07080 - 1517327..1518700 (-) 1374 WP_308391278.1 L-cystine transporter -
  QZL40_RS07085 - 1518893..1519588 (-) 696 WP_017448627.1 NAD(P)H-binding protein -
  QZL40_RS07090 cobT 1520272..1521315 (+) 1044 WP_021453099.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  QZL40_RS07095 - 1521360..1522112 (+) 753 WP_031776489.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54615.95 Da        Isoelectric Point: 4.9813

>NTDB_id=856478 QZL40_RS07075 WP_005454911.1 1515750..1517171(-) (sbcB) [Vibrio parahaemolyticus strain I13A]
MHQDNQPTFFFFDYETWGTNPAKDRPSQFAGVRTDENFNIIGEPLVMYCQLPADYLPSPEAALITGITPQKAMQEGLSEP
EFIAKIHAELSKPKTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVLRACHALRPEGVEWPENEDGFT
SFKLEHLSVKNGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRHKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSTEELHERLYTKREDLGDLLPVPVKLVHLNKCPILAPAKTLTAENAEN
IGIDRQKCLDNLALLRQHPEIREKLIGLFSIERQFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARNFPGTLDEQEQRRWALHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=856478 QZL40_RS07075 WP_005454911.1 1515750..1517171(-) (sbcB) [Vibrio parahaemolyticus strain I13A]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTCTTTGACTACGAGACTTGGGGTACAAATCCCGCGAAAGATCGTCCAAG
CCAATTTGCTGGTGTTCGCACAGATGAAAACTTCAATATCATCGGCGAACCTCTGGTGATGTACTGCCAGCTTCCTGCTG
ATTATCTACCTTCTCCGGAAGCCGCATTAATTACGGGTATTACGCCGCAAAAGGCGATGCAAGAAGGCCTATCTGAGCCT
GAGTTCATTGCTAAGATTCACGCCGAGTTATCGAAACCCAAAACCACTAGCCTAGGCTACAACAGCATTCGTTTTGATGA
CGAAGTCACGCGTTACACCTGTTACCGCAACTTTATCGACCCATACGCGTGGAGCTGGCAAAACGGCAACTCGCGTTGGG
ATTTGCTCGATGTATTGCGTGCATGCCATGCGTTGCGTCCTGAAGGCGTAGAATGGCCCGAGAATGAAGACGGCTTCACC
AGTTTCAAGCTAGAACATTTATCGGTTAAAAATGGCATTGAGCACAGTAATGCGCACGACGCGATGGCTGACGTTATCGC
AACGATTGAGATGGCAAAGAAAGTCAAAGCCGCACAGCCAAAACTGTTCGATTACTTCTTCTCTATGCGCCACAAACGTA
AGCTGAATGAACTGGTTGATATTGTAAACATGACACCGCTGATGCATGTCTCAGGCATGTTAGGTCGCGAATGCCAATAC
ACTAGCTGGATTGTGCCTGTCGCGTGGCATCCAACGAATAACAACGCGGTTATTACGATTGATTTAGCCAAAGATCCGCA
GCCAATTCTTGAACTTTCAACCGAAGAGTTGCACGAACGTCTCTACACCAAGCGTGAAGACCTCGGCGACCTACTACCCG
TACCGGTGAAACTGGTTCACCTCAATAAGTGCCCTATTTTAGCACCAGCGAAAACGTTGACGGCGGAAAACGCAGAAAAC
ATCGGTATTGATCGTCAGAAGTGTCTCGATAATTTGGCACTACTTCGCCAGCACCCTGAGATTCGAGAAAAACTAATCGG
CTTGTTCTCTATCGAACGTCAATTTGAAAAAAGCGATGATGTGGACACTCAACTTTACGATGGGTTCTTCTCTCCAGCCG
ACCGTGCAGCGATGGATATTATCCGCGAAACCGATCCAAACAATCTTGCTGCCTTAGATATCGAGTTTGACGATAAACGC
ATCAAACCGCTGCTATTCAGATACCGTGCTCGTAACTTCCCAGGCACTCTCGATGAGCAAGAGCAACGACGCTGGGCACT
TCATTGCCGAGAGGTATTTGAAAGCCAAATCGAAGAGTATATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATTGCAATATTAAAATCCGTTTACCGTTATGTAGAGAGCCTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0L8TA80

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.915

100

0.799