Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V9Z42_RS15390 Genome accession   NZ_CP146663
Coordinates   3114949..3115578 (-) Length   209 a.a.
NCBI ID   WP_000839136.1    Uniprot ID   A0A0H2V5S2
Organism   Escherichia coli strain MS 110-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3109949..3120578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z42_RS15375 (V9Z42_15375) helD 3110191..3112245 (-) 2055 WP_001350178.1 DNA helicase IV -
  V9Z42_RS15380 (V9Z42_15380) yccF 3112368..3112814 (+) 447 WP_001261236.1 YccF domain-containing protein -
  V9Z42_RS15385 (V9Z42_15385) yccS 3112824..3114986 (+) 2163 WP_000875041.1 YccS family putative transporter -
  V9Z42_RS15390 (V9Z42_15390) sxy/tfoX 3114949..3115578 (-) 630 WP_000839136.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V9Z42_RS15395 (V9Z42_15395) sulA 3115797..3116306 (+) 510 WP_000287750.1 SOS-induced cell division inhibitor SulA -
  V9Z42_RS15400 (V9Z42_15400) ompA 3116662..3117702 (+) 1041 WP_001350588.1 porin OmpA -
  V9Z42_RS15405 (V9Z42_15405) matP 3117780..3118232 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  V9Z42_RS15410 (V9Z42_15410) ycbZ 3118418..3120178 (+) 1761 WP_000156501.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24128.06 Da        Isoelectric Point: 9.2180

>NTDB_id=856471 V9Z42_RS15390 WP_000839136.1 3114949..3115578(-) (sxy/tfoX) [Escherichia coli strain MS 110-3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAPYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNIRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=856471 V9Z42_RS15390 WP_000839136.1 3114949..3115578(-) (sxy/tfoX) [Escherichia coli strain MS 110-3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACCGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGTACGCGCAATATTCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2V5S2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.043

100

0.99