Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   QZL36_RS18270 Genome accession   NZ_CP129933
Coordinates   711654..712835 (-) Length   393 a.a.
NCBI ID   WP_308385885.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate BM18B     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 706654..717835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL36_RS18255 - 707958..708505 (+) 548 Protein_627 GNAT family N-acetyltransferase -
  QZL36_RS18260 - 708591..709208 (-) 618 WP_025592898.1 HAD family phosphatase -
  QZL36_RS18265 cqsS 709528..711576 (+) 2049 WP_025588878.1 response regulator Regulator
  QZL36_RS18270 cqsA 711654..712835 (-) 1182 WP_308385885.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  QZL36_RS18275 ylqF 713190..714134 (-) 945 WP_005454328.1 ribosome biogenesis GTPase YlqF -
  QZL36_RS18280 - 714428..715165 (-) 738 WP_005454086.1 EAL domain-containing protein -
  QZL36_RS18285 - 715345..717585 (-) 2241 WP_308386044.1 collagenase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 43896.29 Da        Isoelectric Point: 6.6125

>NTDB_id=856460 QZL36_RS18270 WP_308385885.1 711654..712835(-) (cqsA) [Vibrio parahaemolyticus isolate BM18B]
MCTKNETKPLPSFIEERLNFHIQDLIKSNENQKHLVLGKRPSENAVVMQSNDYLSLSHNELIQKAHRDAISERDDNVVMS
AIFLQDDQSKPAFEHQLATFVGMESCLLSQSGWAANIGLLQTICAPNVPVYIDFFAHMSLWEGARTAGAQIHPFMHNNMN
HLRKQIQRHGAGIIVVDSVYSTIGTIAPLRVIYEMAKEFDCGLVVDESHSLGTHGPKGSGLLQELGLTQMVDFVTVSLAK
TFAYRAGAILGPNKLAQSLPFVAYPAIFSSTVLPQEVVRLEKTLEVIKAADDKRECLFKRAKELTIGLKRIGFKIRSESQ
IIALECGSERNTERVRDFLEERDVFGAVFCRPATGRNKNIIRFSVNADMTAQQVDHVLSACQEAFDHPDLEFV

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=856460 QZL36_RS18270 WP_308385885.1 711654..712835(-) (cqsA) [Vibrio parahaemolyticus isolate BM18B]
ATGTGTACTAAAAACGAAACTAAACCACTGCCCTCTTTTATCGAGGAACGCCTTAATTTCCATATTCAAGATTTAATTAA
ATCTAACGAAAATCAAAAGCACCTCGTTCTTGGCAAACGACCGTCCGAAAATGCTGTGGTTATGCAAAGCAATGATTACC
TTTCGCTCTCTCACAATGAGCTCATTCAGAAAGCGCATCGAGACGCAATTTCTGAACGAGATGACAATGTCGTGATGTCG
GCAATCTTCTTACAAGATGACCAATCAAAACCCGCCTTTGAGCACCAACTGGCGACGTTTGTCGGCATGGAAAGTTGTTT
GTTGTCACAATCAGGATGGGCAGCCAATATTGGTTTACTGCAAACCATCTGCGCGCCAAACGTTCCCGTATACATCGACT
TTTTCGCTCATATGTCGTTGTGGGAAGGAGCACGCACCGCTGGAGCGCAGATTCATCCTTTCATGCACAACAACATGAAT
CATCTGCGCAAGCAGATCCAACGCCACGGTGCGGGAATCATCGTTGTCGATTCTGTGTATAGCACGATTGGCACAATCGC
CCCGTTACGTGTCATCTACGAAATGGCTAAGGAGTTTGATTGTGGCTTAGTGGTAGATGAATCCCATTCATTAGGCACAC
ACGGACCAAAGGGGTCTGGATTATTACAAGAACTGGGACTGACACAGATGGTGGATTTCGTTACCGTAAGTTTGGCTAAA
ACGTTCGCCTACCGCGCTGGTGCGATTTTAGGCCCGAACAAGCTAGCACAATCGCTGCCCTTCGTGGCCTATCCTGCGAT
TTTTAGCTCAACGGTTTTGCCGCAAGAAGTCGTGCGTCTAGAAAAAACACTTGAGGTAATTAAAGCGGCTGACGACAAAC
GTGAATGTTTGTTCAAGCGAGCCAAAGAACTCACCATCGGATTAAAACGTATTGGGTTTAAAATTCGCAGCGAATCGCAG
ATTATTGCTCTTGAGTGTGGAAGCGAGAGAAACACTGAACGAGTACGCGATTTCCTTGAAGAAAGAGACGTTTTCGGTGC
GGTGTTTTGTCGACCGGCCACGGGCAGAAACAAGAACATCATTCGATTTTCTGTCAATGCCGACATGACAGCTCAACAAG
TGGATCACGTCTTATCGGCTTGTCAGGAGGCATTTGACCATCCCGACTTAGAGTTTGTGTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(45-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

58.656

98.473

0.578