Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   QZL36_RS17305 Genome accession   NZ_CP129933
Coordinates   473987..475084 (+) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus isolate BM18B     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 468987..480084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL36_RS17275 - 469125..470102 (+) 978 WP_015313433.1 Gfo/Idh/MocA family protein -
  QZL36_RS17280 - 470176..471513 (-) 1338 WP_025817651.1 MATE family efflux transporter -
  QZL36_RS17285 - 471636..471950 (-) 315 WP_005453573.1 DUF496 family protein -
  QZL36_RS17290 - 472277..472492 (+) 216 WP_005477197.1 hypothetical protein -
  QZL36_RS17295 - 472669..473322 (+) 654 WP_308385992.1 YceH family protein -
  QZL36_RS17300 - 473315..473635 (+) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  QZL36_RS17305 luxP 473987..475084 (+) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  QZL36_RS17310 luxQ 475084..477660 (+) 2577 WP_005463469.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  QZL36_RS17315 - 477872..478327 (+) 456 WP_005477342.1 MarR family transcriptional regulator -
  QZL36_RS17320 - 478365..479420 (+) 1056 WP_015313427.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=856458 QZL36_RS17305 WP_005463467.1 473987..475084(+) (luxP) [Vibrio parahaemolyticus isolate BM18B]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=856458 QZL36_RS17305 WP_005463467.1 473987..475084(+) (luxP) [Vibrio parahaemolyticus isolate BM18B]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCTGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTAAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCTTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGAGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTATTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCACCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCTGGGTATGAAGCTGCAAAAGCCAGTTTGAAAAAATACCCAGATGTCGAGTTCATTTATGCTTGTTCAACCGA
CGTTGCGTTAGGTGCCGTCGAAGCACTTTCTGAACTTGGCCGTGAAGACGTTATGATTAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCTATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAGCCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644