Detailed information NTG0856445

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QZL36_RS12895
• Genome accession: NZ_CP129932
• Coordinates: 2804275..2805264 (-)
• Length: 329 a.a.
• NCBI ID: WP_005478537.1
• Uniprot ID: A8D8R0
• Organism: Vibrio parahaemolyticus isolate BM18B
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2799275..2810264

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZL36_RS12880	recA	2799823..2800866 (-)	1044	WP_005478550.1	recombinase RecA	Machinery gene
QZL36_RS12885	pncC	2801067..2801549 (-)	483	WP_308385407.1	nicotinamide-nucleotide amidase	-
QZL36_RS12890	mutS	2801634..2804195 (+)	2562	WP_062866927.1	DNA mismatch repair protein MutS	-
QZL36_RS12895	rpoS	2804275..2805264 (-)	990	WP_005478537.1	RNA polymerase sigma factor RpoS	Regulator
QZL36_RS12900	-	2805345..2806268 (-)	924	WP_005455560.1	peptidoglycan DD-metalloendopeptidase family protein	-
QZL36_RS12905	-	2806283..2806909 (-)	627	WP_005455562.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QZL36_RS12910	surE	2806909..2807685 (-)	777	WP_025536693.1	5'/3'-nucleotidase SurE	-
QZL36_RS12915	truD	2807685..2808728 (-)	1044	WP_029804969.1	tRNA pseudouridine(13) synthase TruD	-
QZL36_RS12920	ispF	2808775..2809251 (-)	477	WP_005455572.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QZL36_RS12925	ispD	2809269..2809973 (-)	705	WP_024702351.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QZL36_RS12930	ftsB	2809975..2810256 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37560.38 Da
• Isoelectric Point: 4.6096

>NTDB_id=856445 QZL36_RS12895 WP_005478537.1 2804275..2805264(-) (rpoS) [Vibrio parahaemolyticus isolate BM18B]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=856445 QZL36_RS12895 WP_005478537.1 2804275..2805264(-) (rpoS) [Vibrio parahaemolyticus isolate BM18B]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAATAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAACGTGTACGTCAAATTCAAGTTGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

3D structure

• AlphaFold DB: A8D8R0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851