Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   QZL36_RS02150 Genome accession   NZ_CP129932
Coordinates   447684..448730 (-) Length   348 a.a.
NCBI ID   WP_254894148.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate BM18B     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 442684..453730
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL36_RS02120 zapB 442855..443097 (+) 243 WP_005481417.1 cell division protein ZapB -
  QZL36_RS02125 rraA 443202..443714 (-) 513 WP_005457192.1 ribonuclease E activity regulator RraA -
  QZL36_RS02130 - 443791..444708 (-) 918 WP_005457195.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  QZL36_RS02135 hslU 444893..446224 (-) 1332 WP_005457198.1 HslU--HslV peptidase ATPase subunit -
  QZL36_RS02140 hslV 446248..446799 (-) 552 WP_005489705.1 ATP-dependent protease subunit HslV -
  QZL36_RS02145 ftsN 446963..447508 (-) 546 WP_005481405.1 cell division protein FtsN -
  QZL36_RS02150 cytR 447684..448730 (-) 1047 WP_254894148.1 DNA-binding transcriptional regulator CytR Regulator
  QZL36_RS02155 priA 449024..451228 (-) 2205 WP_308385304.1 primosomal protein N' -
  QZL36_RS02160 rpmE 451523..451744 (+) 222 WP_005457203.1 50S ribosomal protein L31 -
  QZL36_RS02165 rpsJ 452202..452513 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  QZL36_RS02170 rplC 452528..453157 (+) 630 WP_005456132.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38445.17 Da        Isoelectric Point: 6.7430

>NTDB_id=856424 QZL36_RS02150 WP_254894148.1 447684..448730(-) (cytR) [Vibrio parahaemolyticus isolate BM18B]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=856424 QZL36_RS02150 WP_254894148.1 447684..448730(-) (cytR) [Vibrio parahaemolyticus isolate BM18B]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGCGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTT
AAAGGTCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-341)

Bacterial regulatory proteins, lacI family (LacI)

(16-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  cytR Vibrio cholerae C6706

90.719

95.977

0.871