Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   QZL34_RS17880 Genome accession   NZ_CP129931
Coordinates   471895..472992 (+) Length   365 a.a.
NCBI ID   WP_005463467.1    Uniprot ID   Q87GU4
Organism   Vibrio parahaemolyticus isolate BM24A     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 466895..477992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL34_RS17850 - 467031..468008 (+) 978 WP_015313433.1 Gfo/Idh/MocA family protein -
  QZL34_RS17855 - 468082..469419 (-) 1338 WP_069548884.1 MATE family efflux transporter -
  QZL34_RS17860 - 469542..469856 (-) 315 WP_005453573.1 DUF496 family protein -
  QZL34_RS17865 - 470184..470399 (+) 216 WP_005477197.1 hypothetical protein -
  QZL34_RS17870 - 470576..471226 (+) 651 WP_017447360.1 YceH family protein -
  QZL34_RS17875 - 471223..471543 (+) 321 WP_005463466.1 GIY-YIG nuclease family protein -
  QZL34_RS17880 luxP 471895..472992 (+) 1098 WP_005463467.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  QZL34_RS17885 luxQ 472992..475568 (+) 2577 WP_005463469.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  QZL34_RS17890 - 475780..476235 (+) 456 WP_005477342.1 MarR family transcriptional regulator -
  QZL34_RS17895 - 476274..477329 (+) 1056 WP_021821848.1 HlyD family secretion protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41339.67 Da        Isoelectric Point: 5.0568

>NTDB_id=856412 QZL34_RS17880 WP_005463467.1 471895..472992(+) (luxP) [Vibrio parahaemolyticus isolate BM24A]
MNKALVLSLISIAGMSPASQASQVLNGYWAYQEFLNEFPEQKHLTDALAAAVRDDPVPIAPEKRHPLKISVVYPGQQISD
YWIRNIDAFEKRLDKLNIDYQINQVFTRPNADIKQQSLSLMEALKSNSDYLIFTLDTTRHRKFVEHVLDSTKTKLILQNI
TTPVREWETRQPFMYVGFDHAEGSRELAVEFGKQFPKNTHYSVLYFSEGYISDIRGNTFIHQVNQDSQFELQSAYYTKAT
KQSGYEAAKASLKKYPDVEFIYACSTDVALGAVEALSELGREDVMINGWGGGSAELDAILKGELDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEVVTKSDSPERIEALRKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=856412 QZL34_RS17880 WP_005463467.1 471895..472992(+) (luxP) [Vibrio parahaemolyticus isolate BM24A]
ATGAATAAAGCGTTAGTATTGTCCCTGATTTCAATTGCCGGCATGTCTCCGGCTTCACAAGCCTCTCAGGTTCTTAACGG
CTACTGGGCGTATCAAGAATTCTTAAATGAATTCCCAGAACAGAAACACTTAACGGATGCTCTGGCTGCGGCCGTGAGAG
ACGATCCTGTACCTATTGCCCCTGAAAAAAGACACCCATTAAAAATCTCCGTTGTTTATCCAGGGCAGCAGATTTCTGAT
TACTGGATAAGAAACATCGACGCGTTTGAGAAGCGCTTAGATAAACTCAATATTGATTACCAAATCAATCAAGTGTTTAC
GCGACCGAACGCCGATATCAAACAACAAAGCCTTTCTTTGATGGAAGCACTAAAAAGCAATTCCGACTACTTAATTTTTA
CACTCGATACGACCCGACATCGTAAGTTTGTCGAACATGTTTTAGATTCCACCAAAACCAAACTTATCTTGCAAAATATC
ACGACGCCAGTCCGTGAATGGGAAACTCGACAGCCTTTTATGTACGTCGGTTTCGATCACGCTGAAGGCAGTCGAGAACT
CGCTGTGGAGTTTGGCAAGCAGTTCCCGAAAAATACCCATTACAGCGTTTTGTACTTCTCTGAAGGCTACATTAGCGATA
TCCGTGGTAACACATTCATTCATCAAGTGAACCAAGACAGTCAGTTTGAACTACAATCTGCTTACTATACAAAAGCGACA
AAACAGTCCGGGTATGAAGCTGCAAAAGCCAGCTTGAAAAAGTACCCAGATGTCGAGTTCATTTATGCTTGTTCTACTGA
CGTTGCGTTAGGAGCCGTTGAAGCACTTTCTGAACTTGGCCGCGAAGACGTTATGATCAATGGCTGGGGCGGTGGTTCTG
CTGAGCTAGACGCTATCTTAAAAGGGGAGTTAGATATCACCGTCATGCGTATGAATGATGATACTGGCATTGCTATGGCA
GAGGCGATCAAATGGGATTTGGAAGGTAAACCTGTACCAACGGTGTACTCTGGGGACTTCGAAGTTGTGACCAAATCAGA
TTCCCCTGAGCGAATTGAAGCTCTCAGAAAACGTGCATTTAGATACTCAGATAATTGA

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87GU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

64.56

99.726

0.644