Detailed information NTG0856399

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QZL34_RS13465
• Genome accession: NZ_CP129930
• Coordinates: 2887320..2888309 (-)
• Length: 329 a.a.
• NCBI ID: WP_315868307.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus isolate BM24A
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2882320..2893309

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZL34_RS13450	recA	2882869..2883912 (-)	1044	WP_274037566.1	recombinase RecA	Machinery gene
QZL34_RS13455	pncC	2884113..2884595 (-)	483	WP_029816369.1	nicotinamide-nucleotide amidase	-
QZL34_RS13460	mutS	2884680..2887241 (+)	2562	WP_020835389.1	DNA mismatch repair protein MutS	-
QZL34_RS13465	rpoS	2887320..2888309 (-)	990	WP_315868307.1	RNA polymerase sigma factor RpoS	Regulator
QZL34_RS13470	-	2888390..2889313 (-)	924	WP_024699751.1	peptidoglycan DD-metalloendopeptidase family protein	-
QZL34_RS13475	-	2889328..2889954 (-)	627	WP_029826206.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
QZL34_RS13480	surE	2889954..2890730 (-)	777	WP_005493942.1	5'/3'-nucleotidase SurE	-
QZL34_RS13485	truD	2890730..2891773 (-)	1044	WP_005478539.1	tRNA pseudouridine(13) synthase TruD	-
QZL34_RS13490	ispF	2891820..2892296 (-)	477	WP_005380896.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QZL34_RS13495	ispD	2892314..2893018 (-)	705	WP_005455574.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QZL34_RS13500	ftsB	2893020..2893301 (-)	282	WP_005455577.1	cell division protein FtsB	-

Sequence

Protein

• Length: 329 a.a.
• Molecular weight: 37587.41 Da
• Isoelectric Point: 4.6096

>NTDB_id=856399 QZL34_RS13465 WP_315868307.1 2887320..2888309(-) (rpoS) [Vibrio parahaemolyticus isolate BM24A]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide

• Length: 990 bp

>NTDB_id=856399 QZL34_RS13465 WP_315868307.1 2887320..2888309(-) (rpoS) [Vibrio parahaemolyticus isolate BM24A]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAATAAAAGCCTAGATGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGCTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGCTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CTCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTCGAAGACGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (52-85)

• Sigma-70 region 2 (Sigma70_r2) (90-159)

• Sigma-70, region 4 (Sigma70_r4) (258-311)

• Sigma-70 region 3 (Sigma70_r3) (170-243)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.851