Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   QZL34_RS13335 Genome accession   NZ_CP129930
Coordinates   2865213..2865731 (-) Length   172 a.a.
NCBI ID   WP_005462534.1    Uniprot ID   Q87LS4
Organism   Vibrio parahaemolyticus isolate BM24A     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2860213..2870731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL34_RS13310 rimM 2860321..2860869 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  QZL34_RS13315 rpsP 2860898..2861146 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  QZL34_RS13320 ffh 2861356..2862738 (-) 1383 WP_005462555.1 signal recognition particle protein -
  QZL34_RS13325 - 2862951..2863745 (+) 795 WP_005462565.1 inner membrane protein YpjD -
  QZL34_RS13330 - 2863871..2865151 (+) 1281 WP_005462557.1 HlyC/CorC family transporter -
  QZL34_RS13335 luxS 2865213..2865731 (-) 519 WP_005462534.1 S-ribosylhomocysteine lyase Regulator
  QZL34_RS13340 - 2865793..2866398 (-) 606 WP_015297256.1 hypothetical protein -
  QZL34_RS13345 gshA 2866423..2867991 (-) 1569 WP_015297257.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19033.73 Da        Isoelectric Point: 4.7134

>NTDB_id=856396 QZL34_RS13335 WP_005462534.1 2865213..2865731(-) (luxS) [Vibrio parahaemolyticus isolate BM24A]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWLASMEDVLKVESQNKIPELNEYQCGTAAMHSLEEAQQIAKNILAAGVSVNKNDELA
LPESMLKELRVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=856396 QZL34_RS13335 WP_005462534.1 2865213..2865731(-) (luxS) [Vibrio parahaemolyticus isolate BM24A]
ATGCCTTTACTCGATAGCTTCACCGTAGACCACACTCGCATGAATGCACCAGCAGTGCGTGTCGCGAAAACCATGCAAAC
TCCAAAAGGAGATACCATTACGGTTTTCGACTTACGCTTCACTGCGCCTAACAAAGACATTCTTTCAGAGAAAGGCATTC
ATACACTAGAGCACTTGTACGCAGGTTTCATGCGCAATCACCTAAATGGTGACAGTGTGGAAATCATTGATATCTCACCG
ATGGGATGTCGCACTGGTTTTTACATGAGTCTCATTGGTACGCCTTCTGAACAGCAAGTCGCAGACGCATGGCTTGCTTC
TATGGAAGATGTGCTAAAAGTGGAAAGCCAGAACAAAATCCCTGAGCTAAATGAGTACCAGTGTGGTACTGCAGCGATGC
ATTCTTTAGAAGAAGCACAGCAAATTGCCAAGAACATTCTAGCCGCAGGTGTGTCTGTTAATAAAAACGACGAGTTGGCT
TTGCCAGAATCAATGCTAAAAGAGCTGCGCGTAGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

88.889

99.419

0.884