Detailed information NTG0856391

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: QZL34_RS13060
• Genome accession: NZ_CP129930
• Coordinates: 2794798..2798184 (+)
• Length: 1128 a.a.
• NCBI ID: WP_005461251.1
• Uniprot ID: Q87LY0
• Organism: Vibrio parahaemolyticus isolate BM24A
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 2789798..2803184

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZL34_RS13040	erpA	2790152..2790493 (-)	342	WP_005461279.1	iron-sulfur cluster insertion protein ErpA	-
QZL34_RS13045	hemL	2790741..2792036 (+)	1296	WP_005479079.1	glutamate-1-semialdehyde 2,1-aminomutase	-
QZL34_RS13050	-	2792374..2793459 (+)	1086	WP_005461253.1	AI-2E family transporter	-
QZL34_RS13055	rsmC	2793546..2794571 (+)	1026	WP_005461281.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
QZL34_RS13060	chiS	2794798..2798184 (+)	3387	WP_005461251.1	response regulator	Regulator
QZL34_RS13065	-	2799093..2800775 (+)	1683	WP_005461274.1	ABC transporter substrate-binding protein	-
QZL34_RS13070	-	2800946..2801932 (+)	987	WP_005461259.1	ABC transporter permease	-
QZL34_RS13075	-	2801935..2802960 (+)	1026	WP_005461261.1	ABC transporter permease	-

Sequence

Protein

• Length: 1128 a.a.
• Molecular weight: 127348.05 Da
• Isoelectric Point: 5.4383

>NTDB_id=856391 QZL34_RS13060 WP_005461251.1 2794798..2798184(+) (chiS) [Vibrio parahaemolyticus isolate BM24A]
MFKFYKKQKFKRLQSTLMTAFLVLSITPLTITAIFFLQSHSKDLQEQSTSHLLSVRDTKQQQILDYFEAQETEVMGFVRS
ELAYASGGRFYGLVNAFSRLGNDIEEARENAQQRYIEGSGDQIKTSILPESSNYVGSERYRLLHKRYHWAYLELLKRSDF
NDILLVDINGNVTYSINKDDNYGTNLLTGRYKDSALGKTFKRLADDVNERRKVNEDYTPVIISDFELEHGRQVAWLGAPI
VQQGYLHSYAMFRLPNNGITKLIADKNRESSINTLLVGSDQQPRTINTKQDSIQNSLEVIDKALAGQTDVGTYTNGLGEE
IIAAFAPIQTRGITWALVVQLPEKEAFSRIHQLEKLFVIAMLIAIILVVIASHYLSNFITSPLLKLTWAAEKVSAGDLDE
TTFNTERKDEIGRLAISFERMQRSIREKIQTIKQQNEELESNIKLIQKQNDELQLADKLKDEFLATTSHELRTPLHGMVG
IAETLVSGANGVIPASQKYQLDIIIKSGQRLANLVDDLLDYHKMRYGSMDIQKSAVSLASATRLVLELSNHLLGNKTIRI
INQVPADLKAVSADPQRLEQVLYNLIGNAIKYTSEGKIVISATIVDDHVRVQVVDTGQGIPAEHLEHIFEPLIQAGQDAS
RYRQGAGLGLSISRQLIELMGGSLYVSSQPMVGTTFSFTLPLASEEEIQATQTLVARGHFQIPEINLENGDDLSLPENPD
GPLLYVADDEPVNLRVLESFLRLEGYRVRTVSDGPETLALVEQEKPELLLLDIMMPGMSGYQVCSELRETYDHAELPIIM
LTALSQTEDRVRGFEAGANDYLSKPFNKQELAARIQAHLTASKAEMRHMENKVLESELRQRAVVEASLLETQGRLLEQLE
SAPEAIICLREDQRIRFANEAACKLFKRSLEQLKRSSADELIAPKYLTVKQPHYCGKIDIYIEDIRQNIEADILKLPEGS
GLDVMYIFNVGGGANAARIHNLETAVEVLSSYAFDGDRDQLQKLKELGGEFTRLADKALGNKKDKQDLMREVLVDAMTHA
LDYWESVTGESKFAFAEQSGLWRVYLDRSTLQTRTLDKYMRIETLPKTPRWRTVLSSIEFILEHCKEQSPERAYIEAQRD
KLQRLLTS

Nucleotide

• Length: 3387 bp

>NTDB_id=856391 QZL34_RS13060 WP_005461251.1 2794798..2798184(+) (chiS) [Vibrio parahaemolyticus isolate BM24A]
ATGTTTAAATTCTACAAAAAACAGAAATTTAAGCGCCTTCAGAGTACGCTGATGACTGCGTTTCTTGTCCTCAGCATTAC
GCCTCTTACCATCACTGCGATTTTTTTCCTGCAATCCCATAGTAAAGATCTGCAAGAACAGAGCACTTCACATCTGCTTT
CTGTTCGTGATACCAAACAACAACAGATCCTCGACTACTTCGAAGCGCAAGAAACCGAAGTCATGGGATTTGTACGCTCT
GAGCTCGCGTATGCCAGTGGTGGTCGTTTTTACGGCCTCGTCAATGCATTTAGCCGTTTAGGCAATGATATTGAAGAAGC
ACGTGAAAATGCTCAGCAACGTTATATCGAAGGCAGCGGTGACCAAATCAAAACATCGATTTTGCCGGAGTCCTCAAATT
ATGTCGGCAGTGAACGTTATCGCTTACTCCACAAACGTTATCACTGGGCATATCTGGAGCTACTCAAACGCTCAGATTTT
AATGATATTTTGCTGGTCGATATTAACGGCAACGTGACTTACTCCATCAACAAAGACGACAACTACGGTACTAACCTACT
AACGGGGCGCTACAAAGACTCGGCATTAGGTAAAACCTTTAAACGTCTAGCTGATGACGTCAACGAACGCCGCAAAGTGA
ATGAAGATTATACGCCCGTCATTATTTCTGATTTTGAACTGGAACATGGTCGACAAGTCGCTTGGCTTGGTGCACCTATC
GTTCAGCAAGGCTATTTGCACAGCTATGCTATGTTCCGTTTACCAAACAACGGCATTACCAAGCTGATCGCAGATAAAAA
CCGTGAATCGTCCATCAACACTCTACTGGTCGGCAGCGATCAGCAACCACGTACGATTAATACCAAGCAAGACAGTATTC
AAAACAGTCTTGAAGTCATCGATAAAGCTTTAGCGGGACAAACCGACGTTGGCACCTACACCAATGGACTTGGCGAAGAA
ATTATCGCTGCATTTGCCCCAATTCAAACACGCGGCATTACATGGGCGCTCGTGGTTCAACTTCCAGAAAAAGAGGCGTT
TTCACGCATTCATCAACTGGAAAAACTCTTCGTTATCGCCATGCTAATCGCGATCATTCTTGTGGTGATTGCATCGCATT
ATTTGTCCAACTTCATTACATCACCACTGCTGAAACTGACTTGGGCAGCGGAGAAAGTATCCGCTGGCGACCTCGACGAA
ACGACATTCAATACCGAACGTAAAGATGAAATCGGTCGCTTGGCTATCAGCTTCGAACGTATGCAGCGCTCGATTCGAGA
AAAAATCCAAACCATTAAACAGCAAAACGAAGAACTTGAAAGCAACATCAAGCTGATTCAAAAGCAAAATGATGAGTTGC
AACTGGCTGATAAACTGAAAGATGAGTTCCTCGCAACAACCTCGCACGAATTGCGTACACCGCTACATGGCATGGTTGGG
ATAGCAGAAACCCTTGTGTCAGGAGCAAATGGAGTCATTCCCGCCAGTCAAAAATACCAACTTGATATCATTATCAAAAG
TGGTCAACGCTTAGCTAACCTCGTAGACGATTTATTGGATTACCACAAAATGCGCTATGGCAGCATGGATATACAAAAAT
CAGCAGTAAGCTTAGCTAGTGCAACACGCTTGGTGCTTGAGCTTTCTAATCACCTGCTAGGCAATAAGACCATTCGCATC
ATCAACCAAGTACCAGCCGACCTTAAAGCCGTTTCGGCCGATCCTCAACGCCTCGAACAAGTGCTGTATAACTTGATTGG
CAATGCCATTAAATACACCTCAGAAGGTAAGATCGTCATTTCCGCTACCATTGTCGACGATCACGTCCGCGTGCAAGTGG
TCGATACTGGTCAGGGGATTCCAGCAGAACATCTTGAGCATATTTTTGAGCCTTTAATTCAAGCTGGTCAAGATGCAAGT
CGCTATCGTCAAGGTGCGGGACTGGGGCTATCGATTAGCCGCCAACTGATTGAGTTGATGGGCGGTTCACTTTACGTGAG
CAGTCAGCCGATGGTCGGCACCACGTTTAGTTTCACACTGCCATTGGCCAGCGAAGAAGAAATCCAAGCAACTCAAACCT
TGGTGGCGCGCGGGCACTTTCAAATTCCTGAGATTAATTTGGAAAATGGCGACGACTTATCGCTACCAGAGAACCCTGAT
GGCCCACTGCTTTACGTCGCAGATGATGAACCCGTTAACTTGCGAGTACTGGAAAGCTTCTTGCGCCTAGAAGGATACCG
CGTTCGTACCGTTTCAGATGGCCCAGAAACGCTGGCGCTGGTTGAACAAGAAAAGCCGGAACTGCTGTTACTCGATATTA
TGATGCCCGGCATGAGCGGCTACCAAGTATGTAGTGAACTACGTGAAACCTATGATCATGCTGAGCTACCGATCATTATG
CTCACCGCTCTCAGCCAAACAGAAGACCGAGTGAGAGGCTTTGAAGCAGGCGCGAATGACTACTTATCGAAGCCATTCAA
CAAACAAGAGTTGGCGGCACGTATCCAAGCGCATTTAACAGCAAGTAAAGCGGAAATGCGCCATATGGAAAACAAAGTGC
TGGAGTCAGAGCTTAGACAGCGTGCTGTCGTCGAAGCAAGCCTTCTTGAAACTCAAGGTCGTTTGTTAGAACAGCTAGAA
TCTGCTCCGGAAGCTATTATTTGTCTGCGAGAAGATCAGCGTATTCGTTTTGCCAACGAAGCGGCTTGTAAGCTATTCAA
ACGCAGTTTAGAGCAACTTAAACGCTCATCAGCTGACGAACTGATCGCACCAAAATACTTGACGGTGAAGCAGCCTCATT
ATTGCGGCAAGATTGATATCTACATTGAGGATATTCGTCAAAACATTGAAGCCGACATTCTAAAACTGCCAGAAGGCTCT
GGCTTAGATGTGATGTACATCTTTAATGTCGGTGGTGGGGCTAACGCCGCGCGTATTCATAACCTAGAAACTGCGGTCGA
AGTACTCTCAAGTTATGCATTCGATGGTGATAGAGACCAGTTGCAGAAACTCAAAGAGCTTGGTGGCGAGTTTACTCGTT
TGGCTGATAAGGCTTTGGGCAACAAAAAAGATAAGCAAGATTTGATGCGTGAAGTGTTGGTCGATGCCATGACGCATGCA
TTGGACTATTGGGAGTCTGTTACGGGTGAAAGTAAATTTGCGTTTGCCGAACAAAGTGGACTATGGCGCGTCTACCTCGA
CCGAAGCACACTGCAAACTCGCACGCTCGATAAATACATGCGTATCGAAACTCTGCCTAAAACACCGCGCTGGAGAACGG
TTCTGAGTTCGATTGAGTTTATTCTTGAACACTGTAAAGAACAGAGCCCTGAACGTGCTTACATCGAGGCACAGCGCGAT
AAATTGCAAAGACTGCTCACTAGCTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (726-836)

• HAMP domain (HAMP) (375-427)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

3D structure

• AlphaFold DB: Q87LY0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	76.882	100	0.77