Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   QZL34_RS01955 Genome accession   NZ_CP129930
Coordinates   404584..405630 (-) Length   348 a.a.
NCBI ID   WP_254894148.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus isolate BM24A     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 399584..410630
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL34_RS01925 zapB 399753..399995 (+) 243 WP_005481417.1 cell division protein ZapB -
  QZL34_RS01930 rraA 400100..400612 (-) 513 WP_005457192.1 ribonuclease E activity regulator RraA -
  QZL34_RS01935 - 400689..401606 (-) 918 WP_017449001.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  QZL34_RS01940 hslU 401791..403122 (-) 1332 WP_005489452.1 HslU--HslV peptidase ATPase subunit -
  QZL34_RS01945 hslV 403146..403697 (-) 552 WP_005489705.1 ATP-dependent protease subunit HslV -
  QZL34_RS01950 ftsN 403862..404407 (-) 546 WP_005489623.1 cell division protein FtsN -
  QZL34_RS01955 cytR 404584..405630 (-) 1047 WP_254894148.1 DNA-binding transcriptional regulator CytR Regulator
  QZL34_RS01960 priA 405924..408128 (-) 2205 WP_023624900.1 primosomal protein N' -
  QZL34_RS01965 rpmE 408423..408644 (+) 222 WP_005457203.1 50S ribosomal protein L31 -
  QZL34_RS01970 rpsJ 409102..409413 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  QZL34_RS01975 rplC 409428..410057 (+) 630 WP_005456132.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38445.17 Da        Isoelectric Point: 6.7430

>NTDB_id=856378 QZL34_RS01955 WP_254894148.1 404584..405630(-) (cytR) [Vibrio parahaemolyticus isolate BM24A]
MTSSWQKFERLNTMATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVP
DICDPYFSEIIRGIEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEF
APELELPTVHIDNLTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKA
VRKLLELPEPPTAIFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELL
KGHDVHSGSRLLETKLVVRGSAAPPQRA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=856378 QZL34_RS01955 WP_254894148.1 404584..405630(-) (cytR) [Vibrio parahaemolyticus isolate BM24A]
ATAACGTCATCTTGGCAAAAATTTGAGAGGTTAAACACTATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTC
GACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAAAGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCC
TTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATCTACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCT
GACATCTGTGATCCTTACTTTTCTGAAATCATTCGTGGTATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCT
CGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCATTTGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTAC
TGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAGAACAGAAAAACCTGCCACCAATGGTCATGGCTTGTGAGTTT
GCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAACCTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAACT
TGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACACAGCGGTATTGTGCCAGTTCCGCCAGCAAGGTTATCAACAAG
CCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACAGCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCT
GTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCGATTTTCTGCCACTGTGACACCATGGCAATCGGCGCAATCCA
AGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCTGTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACT
GCGATCCACCGTTAACAACCATTTCTCAACCTCGTTATGAAATTGGCCGCCAAGCGATGCTTATGATGCTCGAACTCCTT
AAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAAACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACG
CGCCTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(181-341)

Bacterial regulatory proteins, lacI family (LacI)

(16-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  cytR Vibrio cholerae C6706

90.719

95.977

0.871