Detailed information    

insolico Bioinformatically predicted

Overview

Name   ddrB   Type   Machinery gene
Locus tag   Q0M94_RS07770 Genome accession   NZ_CP129906
Coordinates   1494539..1494991 (+) Length   150 a.a.
NCBI ID   WP_407541264.1    Uniprot ID   -
Organism   Deinococcus radiomollis strain PO-04-20-132     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1489539..1499991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0M94_RS07740 (Q0M94_07720) - 1490059..1490280 (-) 222 WP_407541258.1 hypothetical protein -
  Q0M94_RS07745 (Q0M94_07725) - 1490364..1490831 (-) 468 WP_407541259.1 S-ribosylhomocysteine lyase -
  Q0M94_RS07750 (Q0M94_07730) lspA 1490946..1491512 (+) 567 WP_407541260.1 signal peptidase II -
  Q0M94_RS07755 (Q0M94_07735) - 1491611..1491814 (-) 204 WP_407541261.1 bL28 family ribosomal protein -
  Q0M94_RS07760 (Q0M94_07740) ychF 1492140..1493237 (+) 1098 WP_407541262.1 redox-regulated ATPase YchF -
  Q0M94_RS07765 (Q0M94_07745) - 1493498..1494424 (+) 927 WP_407541263.1 glycoside hydrolase family 43 protein -
  Q0M94_RS07770 (Q0M94_07750) ddrB 1494539..1494991 (+) 453 WP_407541264.1 single-stranded DNA-binding protein Machinery gene
  Q0M94_RS07775 (Q0M94_07755) - 1495065..1496726 (-) 1662 WP_407541265.1 alpha-amylase family glycosyl hydrolase -
  Q0M94_RS07780 (Q0M94_07760) - 1496784..1497929 (-) 1146 WP_407541266.1 LCP family protein -
  Q0M94_RS07785 (Q0M94_07765) - 1497996..1499480 (-) 1485 WP_407541267.1 S8 family serine peptidase -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 16294.48 Da        Isoelectric Point: 8.3294

>NTDB_id=856352 Q0M94_RS07770 WP_407541264.1 1494539..1494991(+) (ddrB) [Deinococcus radiomollis strain PO-04-20-132]
MPTLNLTGPLGTSISVDVPEERDLLGVLRRYGRQGWTSGEIPAGGLSLPLAMADNFDWSLIGARAYTSPDGEQAVIYKGQ
SYKRRELDEVDTKKIKLPRIVKYSRGARPTDPLHLKEGEEGGVQYVTLISFRGGGRVIDAYVDASAAASK

Nucleotide


Download         Length: 453 bp        

>NTDB_id=856352 Q0M94_RS07770 WP_407541264.1 1494539..1494991(+) (ddrB) [Deinococcus radiomollis strain PO-04-20-132]
ATGCCCACATTGAACCTGACCGGCCCCCTGGGAACAAGCATCAGTGTCGATGTTCCCGAAGAACGTGACCTGTTGGGCGT
GCTGCGCCGCTACGGCCGCCAGGGCTGGACGAGCGGTGAGATTCCGGCCGGTGGCCTGAGCCTGCCGCTCGCGATGGCCG
ACAATTTCGACTGGTCGCTGATTGGAGCGCGGGCCTACACCAGTCCCGACGGCGAGCAAGCCGTGATCTATAAAGGCCAG
AGCTACAAACGCCGCGAACTCGACGAGGTCGACACCAAGAAGATCAAGCTGCCCAGAATCGTGAAGTACAGCAGGGGCGC
GCGGCCCACCGACCCGCTCCACCTCAAGGAAGGCGAGGAGGGCGGCGTACAGTACGTGACGCTCATCAGCTTCCGGGGCG
GCGGGCGCGTGATCGACGCCTACGTGGACGCCTCCGCTGCAGCCAGCAAGTAA

Domains

Predicted by InterproScan.

DdrB-like protein (DdrB)

(6-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ddrB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.993

99.333

0.487