Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   Q0M94_RS06875 Genome accession   NZ_CP129906
Coordinates   1335000..1335731 (-) Length   243 a.a.
NCBI ID   WP_407541110.1    Uniprot ID   -
Organism   Deinococcus radiomollis strain PO-04-20-132     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1330000..1340731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0M94_RS06855 (Q0M94_06850) - 1330397..1330846 (-) 450 WP_407541107.1 hypothetical protein -
  Q0M94_RS06860 (Q0M94_06855) - 1330900..1331394 (-) 495 WP_407541108.1 hypothetical protein -
  Q0M94_RS06865 (Q0M94_06860) - 1332154..1332711 (+) 558 WP_407541109.1 recombinase family protein -
  Q0M94_RS06870 - 1333256..1333657 (+) 402 Protein_1352 recombinase family protein -
  Q0M94_RS06875 (Q0M94_06870) dprA 1335000..1335731 (-) 732 WP_407541110.1 DNA-processing protein DprA Machinery gene
  Q0M94_RS06880 (Q0M94_06875) - 1336102..1338780 (+) 2679 WP_407541111.1 AAA family ATPase -
  Q0M94_RS06885 (Q0M94_06880) argB 1338861..1339613 (-) 753 WP_407541112.1 acetylglutamate kinase -
  Q0M94_RS06890 (Q0M94_06885) - 1339913..1340119 (+) 207 WP_407541113.1 hypothetical protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 25337.34 Da        Isoelectric Point: 9.1086

>NTDB_id=856351 Q0M94_RS06875 WP_407541110.1 1335000..1335731(-) (dprA) [Deinococcus radiomollis strain PO-04-20-132]
MTAAPDPELLALLTLRLTPGLGPRRVEALRRFCGSAQAVLTTPLLELREVSGMDQKTLAALGAPEPQRRAAQEVQRAAAY
GATLLGRGLEGYPAALEALGDPPAVIWVAGELPLLDVVPQAVGVVGTRKASSYALNLAARISADLARAGVVVVSGLARGI
DTAAHTAAVQAGGVSIGLLGSGLDEMYPPENRDLARRLVVISEYPLGTRPAPHNFPMRNRLIPYRHMAGKSGRASLGVCS
ECA

Nucleotide


Download         Length: 732 bp        

>NTDB_id=856351 Q0M94_RS06875 WP_407541110.1 1335000..1335731(-) (dprA) [Deinococcus radiomollis strain PO-04-20-132]
ATGACCGCCGCACCCGACCCGGAACTGCTCGCCCTGCTGACCCTCCGCCTGACACCGGGGCTGGGGCCGCGCCGGGTCGA
GGCGTTGCGGCGCTTCTGCGGCTCAGCCCAGGCGGTGCTGACCACGCCGCTGCTGGAACTGCGCGAGGTGAGCGGCATGG
ACCAGAAGACGCTCGCCGCCCTGGGAGCGCCCGAACCCCAGCGGCGGGCGGCGCAGGAGGTGCAGCGGGCCGCAGCGTAC
GGGGCCACCCTGCTCGGCCGGGGCCTGGAGGGCTACCCGGCCGCCCTGGAAGCGCTCGGCGACCCGCCCGCCGTGATCTG
GGTGGCGGGCGAACTGCCTCTTCTCGACGTTGTTCCACAGGCCGTTGGGGTGGTGGGCACCCGCAAGGCGAGCAGTTACG
CGCTGAACCTGGCGGCCCGGATCAGCGCCGACCTGGCCCGCGCGGGCGTGGTGGTGGTCTCGGGGCTGGCGCGCGGCATC
GACACGGCCGCCCACACCGCCGCCGTGCAGGCCGGGGGCGTGAGCATCGGGCTGCTGGGCAGCGGCCTGGATGAGATGTA
CCCGCCCGAGAACCGCGATCTGGCCCGGCGGCTGGTGGTGATCAGTGAATACCCACTGGGCACCCGGCCCGCCCCGCACA
ACTTCCCGATGCGCAATCGCCTGATACCCTACCGTCATATGGCCGGAAAGTCTGGCCGTGCATCTCTAGGCGTATGCTCT
GAGTGCGCTTAA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.986

89.3

0.527
  dprA Thermus thermophilus HB27

46.445

86.831

0.403