Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QY062_RS10680 Genome accession   NZ_CP129891
Coordinates   1982072..1983022 (+) Length   316 a.a.
NCBI ID   WP_057244399.1    Uniprot ID   -
Organism   Priestia megaterium strain ZS-3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1977072..1988022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY062_RS10650 (QY062_10650) - 1977296..1978342 (+) 1047 WP_013057897.1 galactitol-1-phosphate 5-dehydrogenase -
  QY062_RS10655 (QY062_10655) - 1978348..1979379 (+) 1032 WP_098803625.1 zinc-binding dehydrogenase -
  QY062_RS10660 (QY062_10660) - 1979422..1979766 (+) 345 WP_013057895.1 hypothetical protein -
  QY062_RS10665 (QY062_10665) - 1980084..1980248 (+) 165 WP_013057894.1 hypothetical protein -
  QY062_RS10670 (QY062_10670) - 1980330..1980584 (-) 255 WP_013057893.1 hypothetical protein -
  QY062_RS10675 (QY062_10675) - 1980947..1981753 (+) 807 WP_063672061.1 cell wall hydrolase -
  QY062_RS10680 (QY062_10680) ceuB 1982072..1983022 (+) 951 WP_057244399.1 ABC transporter permease Machinery gene
  QY062_RS10685 (QY062_10685) - 1983015..1983962 (+) 948 WP_013057890.1 iron chelate uptake ABC transporter family permease subunit -
  QY062_RS10690 (QY062_10690) - 1983956..1984714 (+) 759 WP_013057889.1 ABC transporter ATP-binding protein -
  QY062_RS10695 (QY062_10695) - 1984738..1985694 (+) 957 WP_053487467.1 siderophore ABC transporter substrate-binding protein -
  QY062_RS10700 (QY062_10700) - 1986231..1987073 (+) 843 WP_063672059.1 manganese catalase family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35009.31 Da        Isoelectric Point: 9.9071

>NTDB_id=856313 QY062_RS10680 WP_057244399.1 1982072..1983022(+) (ceuB) [Priestia megaterium strain ZS-3]
MKFYQLILVFAVLSILSLFVGVQDLSAMDLFHLTKEESQTLFFSRFPRLLSIIMAGMSLSICGLIMQQITRNKFVSPTTA
GTMDWARLGVLISLLVFASASPLLKMSIAFIFSLAGNLLFMKILDRIKFNDTIYIPLVGLMLGSIVSSLATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYLYADKFTVAGMGESFSINLGVKYKQIVNIGLVIVSLITSITILTVGM
LPFLGLIIPNIVSIYRGDHLRKSLPHTALLGAVFVLACDILGRVIIFPYEISIGLMVGVIGSAIFLFMLIRRGRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=856313 QY062_RS10680 WP_057244399.1 1982072..1983022(+) (ceuB) [Priestia megaterium strain ZS-3]
TTGAAGTTTTATCAGTTAATTCTTGTGTTTGCTGTACTATCGATTTTGTCTCTTTTTGTAGGAGTACAAGATCTGTCAGC
GATGGATCTGTTTCATTTAACAAAAGAAGAAAGCCAAACGCTGTTTTTTAGTCGTTTTCCTAGGCTTTTGAGTATTATTA
TGGCGGGAATGAGCCTTAGTATTTGCGGATTAATTATGCAGCAAATTACGCGAAATAAGTTTGTATCTCCAACAACGGCA
GGAACGATGGACTGGGCAAGGCTTGGTGTGTTGATTTCTCTACTAGTATTTGCTTCAGCAAGTCCTCTATTAAAAATGAG
CATTGCTTTCATTTTCTCACTGGCGGGCAATCTATTGTTTATGAAAATACTAGACAGAATTAAATTTAACGATACGATTT
ATATTCCACTAGTCGGTTTAATGCTCGGTAGTATCGTAAGTTCCTTAGCTACCTTCATTGCCTATAAATACGATTTGATT
CAAAACCTTTCTTCATGGCTGCAAGGCGACTTTTCGCTAGTAGTCAAAGGGAGATATGAACTTTTATACCTTAGTATACC
GCTCTTAATAATTGCTTATCTTTACGCAGATAAGTTCACGGTTGCTGGTATGGGAGAAAGCTTTTCAATCAATTTAGGCG
TGAAATACAAACAAATCGTAAACATTGGATTAGTCATTGTTTCGCTTATTACTTCGATTACGATTTTGACCGTTGGCATG
CTGCCTTTCTTAGGATTAATCATCCCAAATATCGTATCGATTTACCGTGGAGATCATTTGCGCAAAAGCCTGCCTCATAC
AGCGCTGCTTGGAGCTGTGTTCGTACTTGCGTGCGATATTTTAGGCAGAGTCATTATTTTCCCATATGAAATCTCTATCG
GGTTAATGGTAGGTGTAATAGGAAGTGCGATCTTTCTTTTTATGCTGATAAGGAGAGGTCGTTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.318

95.57

0.5