Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QY062_RS10395 Genome accession   NZ_CP129891
Coordinates   1937546..1937968 (-) Length   140 a.a.
NCBI ID   WP_013057949.1    Uniprot ID   A0A8D3X0F8
Organism   Priestia megaterium strain ZS-3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1932546..1942968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY062_RS10365 (QY062_10365) - 1932653..1933138 (+) 486 WP_406643882.1 hypothetical protein -
  QY062_RS10370 (QY062_10370) - 1933446..1933991 (-) 546 WP_057273558.1 GNAT family N-acetyltransferase -
  QY062_RS10375 (QY062_10375) - 1934289..1935569 (+) 1281 WP_406643883.1 glycosyltransferase -
  QY062_RS10380 (QY062_10380) - 1935593..1936249 (+) 657 WP_013057952.1 TetR/AcrR family transcriptional regulator -
  QY062_RS10385 (QY062_10385) - 1936405..1936998 (+) 594 WP_013057951.1 hypothetical protein -
  QY062_RS10390 (QY062_10390) - 1937039..1937383 (-) 345 WP_028414497.1 DUF1516 family protein -
  QY062_RS10395 (QY062_10395) nucA/comI 1937546..1937968 (-) 423 WP_013057949.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QY062_RS10400 (QY062_10400) - 1938109..1938573 (-) 465 WP_029322913.1 FixH family protein -
  QY062_RS10405 (QY062_10405) - 1938603..1939985 (-) 1383 WP_053487484.1 PepSY domain-containing protein -
  QY062_RS10410 (QY062_10410) - 1940098..1941090 (-) 993 WP_406643884.1 glycerophosphodiester phosphodiesterase family protein -
  QY062_RS10415 (QY062_10415) - 1941266..1941907 (-) 642 WP_053487482.1 response regulator transcription factor -
  QY062_RS10420 (QY062_10420) - 1941908..1942729 (-) 822 WP_406643885.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15329.17 Da        Isoelectric Point: 4.4990

>NTDB_id=856312 QY062_RS10395 WP_013057949.1 1937546..1937968(-) (nucA/comI) [Priestia megaterium strain ZS-3]
MKKIVSGILILVLAVIVMIEGNPLEQNSSTNTSYDEVITFPADRYPETAAHIQHAIDKGKSAVCTIDRDGAEENRRESLK
GIPTKSGYDRDEFPMAFCEEGGSGADIEYVKPSDNRGAGSWISHQVDEFPDGTKVLIEVK

Nucleotide


Download         Length: 423 bp        

>NTDB_id=856312 QY062_RS10395 WP_013057949.1 1937546..1937968(-) (nucA/comI) [Priestia megaterium strain ZS-3]
TTGAAAAAAATTGTTTCTGGAATTTTAATTTTAGTATTAGCCGTTATTGTTATGATTGAAGGAAATCCGTTAGAGCAGAA
CTCTTCAACGAATACCTCCTACGATGAAGTAATTACCTTCCCTGCTGATCGTTACCCTGAAACTGCAGCGCACATTCAAC
ATGCAATCGATAAAGGAAAATCGGCTGTTTGTACAATCGACCGAGACGGGGCTGAGGAAAACCGCCGTGAGTCTTTAAAA
GGCATTCCGACTAAAAGCGGCTATGACCGAGATGAGTTTCCGATGGCCTTTTGTGAAGAAGGCGGAAGCGGTGCCGATAT
TGAATATGTAAAGCCTTCAGACAATCGAGGCGCCGGGTCTTGGATCTCACATCAAGTAGACGAGTTTCCTGACGGTACGA
AGGTTTTAATTGAAGTGAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(43-137)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

61.207

82.857

0.507