Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   QY062_RS07305 Genome accession   NZ_CP129891
Coordinates   1414877..1415251 (-) Length   124 a.a.
NCBI ID   WP_223269005.1    Uniprot ID   -
Organism   Priestia megaterium strain ZS-3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1409877..1420251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QY062_RS07280 (QY062_07280) - 1410451..1410819 (-) 369 WP_029323759.1 helix-turn-helix domain-containing protein -
  QY062_RS07285 (QY062_07285) - 1411059..1411577 (+) 519 WP_223272391.1 enoyl-CoA hydratase/isomerase family protein -
  QY062_RS07290 (QY062_07290) - 1411717..1411842 (+) 126 WP_016765178.1 hypothetical protein -
  QY062_RS07295 (QY062_07295) helD 1412087..1414405 (+) 2319 WP_013058564.1 RNA polymerase recycling motor HelD -
  QY062_RS07300 (QY062_07300) comJ 1414434..1414841 (-) 408 WP_013058563.1 competence protein ComJ -
  QY062_RS07305 (QY062_07305) nucA/comI 1414877..1415251 (-) 375 WP_223269005.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  QY062_RS07310 (QY062_07310) - 1415544..1415804 (+) 261 WP_013058561.1 metal-sensitive transcriptional regulator -
  QY062_RS07315 (QY062_07315) - 1415960..1417909 (+) 1950 WP_053487648.1 FUSC family protein -
  QY062_RS07320 (QY062_07320) - 1417945..1418763 (-) 819 WP_013058559.1 squalene/phytoene synthase family protein -
  QY062_RS07325 (QY062_07325) - 1419089..1419760 (+) 672 WP_013058558.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13661.90 Da        Isoelectric Point: 4.2601

>NTDB_id=856308 QY062_RS07305 WP_223269005.1 1414877..1415251(-) (nucA/comI) [Priestia megaterium strain ZS-3]
MGHAAFLAPEKTEAEVNYDATLYFPLDRYPETGDHIRDAIAAGHSSVCTIDRDGAEANREESLKGYPTKTGYDRDEWPMA
MCEEGGAGADIRYISPSDNRGAGSWVGNQLEQYPDGTRVQFIVQ

Nucleotide


Download         Length: 375 bp        

>NTDB_id=856308 QY062_RS07305 WP_223269005.1 1414877..1415251(-) (nucA/comI) [Priestia megaterium strain ZS-3]
ATGGGACATGCAGCTTTTTTAGCTCCTGAAAAAACGGAAGCTGAAGTAAACTATGATGCGACGCTTTATTTTCCGTTAGA
CCGATATCCTGAAACGGGTGATCATATTCGTGACGCGATTGCCGCTGGGCACTCTTCCGTTTGCACAATTGATCGCGACG
GTGCTGAAGCGAACCGGGAAGAATCGCTGAAAGGATATCCGACAAAAACAGGCTATGACCGTGATGAATGGCCAATGGCT
ATGTGCGAAGAAGGCGGAGCAGGAGCTGACATTCGCTATATTTCACCTTCTGATAACCGTGGAGCCGGCTCATGGGTTGG
AAATCAGTTAGAACAGTATCCAGATGGTACACGCGTACAATTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(30-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

67.227

95.968

0.645