Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   V9Z36_RS02030 Genome accession   NZ_CP146655
Coordinates   435875..436342 (-) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain MS 145-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 430875..441342
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z36_RS02005 (V9Z36_02005) rpsG 431016..431486 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  V9Z36_RS02010 (V9Z36_02010) fusA 431583..433697 (+) 2115 WP_000124700.1 elongation factor G -
  V9Z36_RS02015 (V9Z36_02015) tuf 433768..434952 (+) 1185 WP_000031783.1 elongation factor Tu -
  V9Z36_RS02020 (V9Z36_02020) bfd 435135..435329 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  V9Z36_RS02025 (V9Z36_02025) bfr 435402..435878 (+) 477 WP_000675515.1 bacterioferritin -
  V9Z36_RS02030 (V9Z36_02030) pilD 435875..436342 (-) 468 WP_000340171.1 A24 family peptidase Machinery gene
  V9Z36_RS02035 (V9Z36_02035) rpsJ 436721..437032 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  V9Z36_RS02040 (V9Z36_02040) rplC 437065..437694 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  V9Z36_RS02045 (V9Z36_02045) rplD 437705..438310 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  V9Z36_RS02050 (V9Z36_02050) rplW 438307..438609 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  V9Z36_RS02055 (V9Z36_02055) rplB 438627..439448 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  V9Z36_RS02060 (V9Z36_02060) rpsS 439465..439743 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  V9Z36_RS02065 (V9Z36_02065) rplV 439758..440090 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  V9Z36_RS02070 (V9Z36_02070) rpsC 440108..440809 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  V9Z36_RS02075 (V9Z36_02075) rplP 440822..441232 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=856270 V9Z36_RS02030 WP_000340171.1 435875..436342(-) (pilD) [Escherichia coli strain MS 145-7]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=856270 V9Z36_RS02030 WP_000340171.1 435875..436342(-) (pilD) [Escherichia coli strain MS 145-7]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361