Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   QUE76_RS25265 Genome accession   NZ_AP027419
Coordinates   4983997..4984989 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain EC476 isolate EC476     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4978997..4989989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE76_RS25255 (MUTS6_48470) yieP 4981889..4982581 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  QUE76_RS25260 (MUTS6_48480) mdtD 4982604..4984031 (+) 1428 WP_001280849.1 multidrug transporter subunit MdtD -
  QUE76_RS25265 (MUTS6_48490) cytR 4983997..4984989 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  QUE76_RS25270 (MUTS6_48500) rbsK 4984993..4985922 (-) 930 WP_001361088.1 ribokinase -
  QUE76_RS25275 (MUTS6_48510) rbsB 4986047..4986937 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  QUE76_RS25280 (MUTS6_48520) rbsC 4986962..4987927 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  QUE76_RS25285 (MUTS6_48530) rbsA 4987932..4989437 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  QUE76_RS25290 (MUTS6_48540) rbsD 4989445..4989864 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=85620 QUE76_RS25265 WP_000224470.1 4983997..4984989(-) (cytR) [Escherichia coli strain EC476 isolate EC476]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=85620 QUE76_RS25265 WP_000224470.1 4983997..4984989(-) (cytR) [Escherichia coli strain EC476 isolate EC476]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAACGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGTGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATTGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCAGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCTGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACAACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAACCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment