Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   Q0F95_RS09130 Genome accession   NZ_CP129881
Coordinates   1875997..1877814 (-) Length   605 a.a.
NCBI ID   WP_103100214.1    Uniprot ID   -
Organism   Tetragenococcus halophilus strain H189     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1870997..1882814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0F95_RS09105 (Q0F95_09095) mgtE 1871307..1872671 (-) 1365 WP_041591768.1 magnesium transporter -
  Q0F95_RS09110 (Q0F95_09100) - 1872677..1873579 (-) 903 WP_069029152.1 RluA family pseudouridine synthase -
  Q0F95_RS09115 (Q0F95_09105) - 1873712..1874518 (-) 807 WP_061840320.1 NAD kinase -
  Q0F95_RS09120 (Q0F95_09110) - 1874511..1875185 (-) 675 WP_014124074.1 GTP pyrophosphokinase family protein -
  Q0F95_RS09125 (Q0F95_09115) - 1875340..1875915 (+) 576 WP_061840319.1 CYTH domain-containing protein -
  Q0F95_RS09130 (Q0F95_09120) pepF 1875997..1877814 (-) 1818 WP_103100214.1 oligoendopeptidase F Regulator
  Q0F95_RS09135 (Q0F95_09125) - 1877902..1878870 (-) 969 WP_069029154.1 competence protein CoiA family protein -
  Q0F95_RS09140 (Q0F95_09130) - 1878981..1879697 (-) 717 WP_014124070.1 adaptor protein MecA -
  Q0F95_RS09145 (Q0F95_09135) spxA 1879846..1880244 (-) 399 WP_103097234.1 transcriptional regulator SpxA -
  Q0F95_RS09150 (Q0F95_09140) - 1880404..1882119 (-) 1716 WP_338475788.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69987.08 Da        Isoelectric Point: 4.7775

>NTDB_id=856179 Q0F95_RS09130 WP_103100214.1 1875997..1877814(-) (pepF) [Tetragenococcus halophilus strain H189]
MSEPKKLPKRDEVAENLTWDLTKIFKDDQAFEKAFSALQEKLRYADSYRGTLGDGSQAFLAALEYLLDVSRQLETVYVYS
HLKNDQDTSNTIYQALNSRAESLVTQADEKLSFFEPELLSLSDERIWQYFKDEPKLEIYRHFVEQIVANRAHVLPKEQEA
LLAGAGEIFGASSNTFSIMNNADFVFPVIEDENGEKVQLSHGVYGQLMESTDRLVRENAFKGLYSVYKQFGNTLASTLNS
HIKTHNYQAKVRHYHSAREAALSSNHIPESVYDHLVDVVNKNLNLLHRYMGLRKRLLQVEKLHMYDVYTPLLGEAPISFT
YDQAVDKAFEVLAPMGEEYLSVVKKAFDERWIDVVENQGKRSGAYSSGTYDTNPYILLNWHDTLDHLFTLVHEMGHSVHS
YFTQNNQPYVYGDYSIFLAEIASTTNENILTEHLLQTENDPRVRAYVLNHYLDGFKGTVFRQTQFAEFEHFMHTEDAKGT
PLTSEFLNEHYGELNRRYYGDEMEDDPEIHLEWSRIPHFYYNYYVFQYATGFSAASALSQKILSEDSSALDRYLTYLKSG
DSDYPIEVMKKAGVDMTKSDYLEDAMHVFEERLNELELLVDELEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=856179 Q0F95_RS09130 WP_103100214.1 1875997..1877814(-) (pepF) [Tetragenococcus halophilus strain H189]
ATGTCAGAACCTAAAAAATTACCTAAAAGAGACGAAGTGGCAGAAAATTTGACTTGGGATTTAACAAAAATCTTTAAAGA
TGACCAAGCATTTGAAAAAGCTTTTAGCGCGCTACAAGAAAAACTGCGGTATGCCGATTCCTATAGAGGAACTCTAGGAG
ATGGCTCACAAGCATTTCTAGCTGCACTTGAATATTTATTAGATGTTTCTCGTCAATTAGAGACTGTCTATGTTTATAGT
CATTTAAAAAATGACCAAGATACCTCAAATACAATTTATCAAGCGCTTAATTCTAGAGCAGAGTCTTTGGTAACACAAGC
AGATGAAAAATTATCTTTTTTCGAACCGGAATTATTATCGTTAAGTGATGAAAGGATTTGGCAGTATTTTAAAGACGAAC
CAAAACTTGAAATTTATCGACATTTTGTTGAACAAATCGTAGCAAATCGTGCCCACGTTTTGCCAAAAGAACAAGAAGCT
TTATTAGCAGGCGCTGGAGAGATTTTTGGTGCTTCTAGTAACACTTTTTCTATTATGAACAATGCTGATTTTGTTTTTCC
TGTCATTGAAGATGAAAATGGAGAAAAAGTACAGCTTTCTCATGGTGTTTATGGACAATTAATGGAAAGCACTGATCGTT
TAGTGCGTGAGAATGCTTTTAAAGGACTATATAGTGTATACAAGCAGTTTGGTAACACTCTTGCTTCTACACTGAATTCA
CATATTAAAACACATAATTATCAAGCAAAAGTGCGCCATTACCATTCAGCTAGAGAAGCTGCTTTATCAAGCAACCATAT
TCCAGAAAGCGTTTATGATCATTTAGTAGATGTGGTCAATAAAAACTTAAACCTTCTTCATCGCTATATGGGACTTAGGA
AACGTTTATTACAAGTGGAAAAATTGCATATGTATGATGTTTACACGCCACTTTTAGGCGAAGCTCCTATTAGTTTTACT
TATGACCAGGCGGTAGATAAAGCGTTTGAAGTACTAGCGCCTATGGGAGAAGAGTATTTAAGTGTCGTGAAAAAGGCCTT
TGATGAACGTTGGATCGATGTTGTAGAAAATCAAGGAAAACGTAGCGGTGCTTATTCTTCAGGTACTTATGATACCAATC
CTTATATTTTATTAAATTGGCATGATACATTGGATCATTTATTTACCCTGGTACATGAAATGGGGCATAGTGTTCATAGT
TACTTTACCCAAAATAATCAACCTTATGTATATGGAGATTACTCAATTTTCTTAGCAGAGATTGCTTCAACTACCAATGA
AAATATCTTGACTGAACATCTTTTACAAACAGAAAATGACCCACGCGTTCGGGCATATGTATTAAATCACTATTTAGACG
GTTTTAAAGGTACAGTTTTCCGTCAAACACAATTTGCGGAGTTTGAGCATTTTATGCACACTGAGGACGCTAAAGGCACA
CCATTAACAAGTGAGTTTTTAAATGAGCATTATGGAGAGTTGAATAGACGATATTATGGTGATGAAATGGAAGACGATCC
AGAAATACATCTTGAATGGTCGCGTATTCCTCATTTTTATTATAATTACTATGTGTTCCAATATGCGACAGGTTTTTCTG
CTGCTTCTGCCTTGTCACAAAAAATCTTATCAGAAGACTCGAGTGCCTTGGATCGTTATTTGACCTATCTAAAATCTGGT
GATAGTGATTATCCTATCGAAGTGATGAAAAAAGCTGGAGTGGATATGACAAAATCGGATTATTTAGAAGATGCGATGCA
TGTTTTTGAAGAGCGGTTAAATGAGTTAGAACTACTCGTTGATGAATTAGAAAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

55.143

98.017

0.54