Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   QZH48_RS11270 Genome accession   NZ_CP129879
Coordinates   2307389..2308750 (-) Length   453 a.a.
NCBI ID   WP_003130563.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain CAB701     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2302389..2313750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZH48_RS11235 (QZH48_11235) - 2302937..2303449 (+) 513 WP_301675729.1 GNAT family N-acetyltransferase -
  QZH48_RS11240 (QZH48_11240) - 2303523..2303792 (-) 270 WP_021723079.1 DUF1048 domain-containing protein -
  QZH48_RS11245 (QZH48_11245) - 2303832..2304179 (-) 348 WP_098394202.1 DUF1048 domain-containing protein -
  QZH48_RS11250 (QZH48_11250) - 2304166..2304528 (-) 363 WP_003129889.1 PadR family transcriptional regulator -
  QZH48_RS11255 (QZH48_11255) - 2304649..2305278 (-) 630 WP_021723075.1 hypothetical protein -
  QZH48_RS11260 (QZH48_11260) - 2305343..2306428 (-) 1086 WP_038602323.1 PIN/TRAM domain-containing protein -
  QZH48_RS11265 (QZH48_11265) - 2306659..2307345 (+) 687 WP_050573393.1 YoaK family protein -
  QZH48_RS11270 (QZH48_11270) radA 2307389..2308750 (-) 1362 WP_003130563.1 DNA repair protein RadA Machinery gene
  QZH48_RS11280 (QZH48_11280) rplQ 2309377..2309757 (-) 381 WP_003130558.1 50S ribosomal protein L17 -
  QZH48_RS11285 (QZH48_11285) - 2309776..2310714 (-) 939 WP_003130557.1 DNA-directed RNA polymerase subunit alpha -
  QZH48_RS11290 (QZH48_11290) rpsK 2310762..2311145 (-) 384 WP_010906297.1 30S ribosomal protein S11 -
  QZH48_RS11295 (QZH48_11295) rpsM 2311166..2311531 (-) 366 WP_003130555.1 30S ribosomal protein S13 -
  QZH48_RS11300 (QZH48_11300) rpmJ 2311549..2311665 (-) 117 WP_001808836.1 50S ribosomal protein L36 -
  QZH48_RS11305 (QZH48_11305) infA 2311719..2311937 (-) 219 WP_003130554.1 translation initiation factor IF-1 -
  QZH48_RS11310 (QZH48_11310) - 2312236..2312883 (-) 648 WP_010906298.1 adenylate kinase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49893.28 Da        Isoelectric Point: 5.1748

>NTDB_id=856136 QZH48_RS11270 WP_003130563.1 2307389..2308750(-) (radA) [Lactococcus lactis subsp. lactis strain CAB701]
MAKKKSSFVCQNCGYKSAKYLGRCPNCGEWSSFVEEVEVQEVKNQRVSMTGERSKPLKLDEVELFDTPRIETDLDEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLASRGRVLYVSGEESAQQIKLRAERLGDIDRDFYLYAETNMQSIRAEVE
RLKPNFLIIDSIQTIMTPEIQSTQGSVSQVREVTGELMQIAKTNDIATFIVGHVTKEGQLAGPRMLEHMVDTVLYFEGER
NNTFRILRAVKNRFGSTNEIGIFEMQGHGLVEVTNPSEVFLEERLEGSTGSAIVCALEGTRPILVEIQALTTPTMFGNAK
RTTSGLDFNRVSLIMAVLEKRTGLLMQNQDAYLKSAGGVKLDEPAIDLAVAVAVASSYKELPTDARECFIGEIGLTGEIR
RVTRIEQRLNEAAKLGFKKVYAPKNSIVGIDIPEQIQVIGVTTLTECLKLVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=856136 QZH48_RS11270 WP_003130563.1 2307389..2308750(-) (radA) [Lactococcus lactis subsp. lactis strain CAB701]
ATGGCGAAGAAAAAATCATCATTTGTTTGTCAAAATTGTGGCTATAAGTCTGCAAAATACTTAGGACGTTGTCCAAACTG
TGGCGAATGGTCTTCTTTTGTTGAAGAAGTTGAAGTCCAAGAAGTTAAAAATCAACGTGTTTCAATGACTGGCGAACGTT
CAAAACCATTGAAGCTAGATGAAGTTGAATTATTTGATACTCCTCGGATTGAAACGGACTTAGATGAATTTAATCGTGTA
TTAGGAGGGGGTGTTGTTCCTGGTTCATTAGTTCTGATTGGGGGAGACCCTGGGATAGGTAAATCAACCTTACTTTTACA
GGTTTCTACTCAATTGGCTTCTAGAGGTCGTGTGCTTTATGTGAGTGGTGAAGAATCAGCCCAACAAATTAAACTAAGAG
CTGAGCGTTTGGGAGATATTGACCGAGACTTCTATCTCTATGCTGAAACAAATATGCAGTCGATTCGTGCAGAAGTTGAG
CGTTTAAAACCTAACTTCTTAATTATTGATTCCATTCAAACAATTATGACACCAGAAATTCAATCAACTCAAGGCTCAGT
AAGTCAAGTTCGTGAAGTGACTGGAGAATTGATGCAAATTGCTAAAACGAATGATATTGCGACCTTTATTGTTGGTCATG
TGACTAAAGAAGGTCAGCTGGCTGGGCCAAGGATGTTAGAGCATATGGTTGATACGGTGCTGTATTTTGAAGGAGAACGA
AATAATACATTTAGAATTCTTCGTGCTGTAAAAAACCGTTTTGGTTCAACTAATGAAATTGGAATTTTTGAGATGCAGGG
TCATGGCCTGGTCGAAGTGACTAATCCCTCAGAGGTCTTTTTAGAAGAACGTTTAGAGGGCTCAACTGGATCTGCAATTG
TTTGTGCACTTGAAGGAACACGGCCCATATTAGTTGAAATACAAGCACTGACGACACCGACAATGTTTGGAAATGCTAAA
AGGACGACCTCAGGCCTAGATTTTAACCGTGTAAGTTTAATTATGGCGGTGCTTGAGAAGAGAACGGGGCTTTTGATGCA
AAATCAAGATGCCTACCTCAAATCTGCGGGGGGAGTAAAATTGGATGAGCCAGCCATTGACCTCGCGGTCGCGGTCGCTG
TGGCTTCAAGTTATAAAGAACTTCCAACAGATGCGCGTGAATGTTTTATTGGTGAAATTGGTTTAACGGGTGAAATTCGT
CGGGTGACCCGAATTGAACAAAGATTGAATGAAGCTGCAAAACTAGGGTTTAAAAAAGTATATGCTCCAAAAAATTCAAT
TGTAGGGATTGATATTCCTGAACAGATTCAAGTGATTGGAGTAACAACTTTAACTGAATGTTTAAAACTAGTCTTTGGCT
AA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

81.236

100

0.812
  radA Streptococcus pneumoniae D39

81.236

100

0.812
  radA Streptococcus pneumoniae R6

81.236

100

0.812
  radA Streptococcus pneumoniae TIGR4

81.236

100

0.812
  radA Streptococcus mitis SK321

81.236

100

0.812
  radA Streptococcus mitis NCTC 12261

81.015

100

0.81
  radA Bacillus subtilis subsp. subtilis str. 168

61.488

100

0.62