Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   QZH48_RS08660 Genome accession   NZ_CP129879
Coordinates   1839182..1840987 (-) Length   601 a.a.
NCBI ID   WP_269887817.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain CAB701     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1834182..1845987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZH48_RS08645 (QZH48_08645) alaS 1834532..1837150 (-) 2619 WP_301675615.1 alanine--tRNA ligase -
  QZH48_RS08650 (QZH48_08650) - 1837416..1838342 (-) 927 WP_058205148.1 peptidyl-prolyl cis-trans isomerase -
  QZH48_RS08655 (QZH48_08655) - 1838496..1839179 (-) 684 WP_301675616.1 O-methyltransferase -
  QZH48_RS08660 (QZH48_08660) pepF 1839182..1840987 (-) 1806 WP_269887817.1 oligoendopeptidase F Regulator
  QZH48_RS08665 (QZH48_08665) coiA 1841050..1842039 (-) 990 WP_058205151.1 competence protein CoiA Machinery gene
  QZH48_RS08670 (QZH48_08670) - 1842113..1843198 (-) 1086 WP_080739875.1 YdcF family protein -
  QZH48_RS08675 (QZH48_08675) - 1843348..1844196 (-) 849 WP_058205152.1 alpha/beta hydrolase -
  QZH48_RS08680 (QZH48_08680) - 1844389..1845810 (-) 1422 WP_012898314.1 NCS2 family permease -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 70015.83 Da        Isoelectric Point: 4.8526

>NTDB_id=856126 QZH48_RS08660 WP_269887817.1 1839182..1840987(-) (pepF) [Lactococcus lactis subsp. lactis strain CAB701]
MAMNRNEIPEKLTWDLTTIYKTDREWEAELTRIKSKLSLVEETDPGHLLDSAESLLTITEKMLSTSQQVEKLYVYASMKN
DQDTREAKYQEYQSKATALYVKFGEVYAFYEPEFLKISKEVYNKWLGELLKLKNYDHMFERLFAKKAHTLSQKEEKLLAA
AGEIFESPSETFEIFDNADIKLPMVKNESDEMVQLTHGNYSSLMESKNREVRKAAYQALYSNYEQYQHTYAKTLQTNVKV
HNLNAQIRSYDSARQAALDNNFVPEKVYDILMEAIHQHLPLLHRYIELRKKILGISDLKMYDIYTPLSNLDYKFNYEDGV
KKAEEVLAIFGKEYKEKVKVAFEQRWIDVEENIGKRSGAYSGGSYDTNAFMLLNWQETLDDLFTLVHEMGHSMHSAFTRE
SQPYVYGDYPIFLAEIASTTNENILTETLLKESKDDKERFALLNHWLDSFRGTVFRQSQFAEFEQKIHEADAAGEVLTSE
YLNSLYGEINEKYYNLAAKENPEIQYEWARIPHFYYNFYVFQYATGFAAATFLAEKVVHGSDEDRQKYLEYLKAGSSAFP
LEVIAKAGVDMESSDYLDAAFELFENRLSELEKLVEKGVHL

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=856126 QZH48_RS08660 WP_269887817.1 1839182..1840987(-) (pepF) [Lactococcus lactis subsp. lactis strain CAB701]
ATGGCTATGAATAGAAATGAAATTCCTGAAAAATTAACTTGGGATTTGACAACAATTTATAAAACAGATAGAGAATGGGA
AGCAGAGCTAACTAGAATAAAAAGCAAACTTTCACTCGTTGAAGAGACAGACCCTGGTCATTTACTTGATTCAGCTGAAA
GTCTTCTGACAATTACCGAAAAAATGCTTTCCACTTCTCAACAAGTTGAAAAACTATATGTTTATGCTTCAATGAAAAAT
GACCAAGATACCAGAGAGGCCAAGTATCAGGAGTATCAGTCAAAAGCAACAGCCCTTTATGTGAAATTCGGAGAGGTCTA
TGCCTTCTATGAACCTGAATTTTTAAAAATTTCAAAAGAAGTCTATAACAAATGGTTGGGGGAGCTTCTAAAATTAAAAA
ACTATGACCATATGTTTGAGCGACTTTTTGCTAAAAAAGCGCATACTCTTAGTCAAAAAGAGGAAAAGCTATTGGCTGCG
GCTGGTGAAATTTTTGAAAGTCCTTCAGAAACTTTTGAGATTTTTGATAATGCAGATATTAAGTTACCTATGGTCAAAAA
TGAATCTGATGAGATGGTCCAACTCACACATGGAAATTATTCTTCATTAATGGAAAGTAAGAATAGAGAAGTACGAAAAG
CAGCCTACCAAGCACTTTATAGTAATTATGAACAATATCAGCATACTTATGCAAAGACCTTACAGACCAATGTAAAAGTC
CATAATCTTAATGCCCAAATCCGTTCTTATGACTCAGCCCGTCAAGCTGCTTTGGATAATAATTTTGTTCCAGAAAAAGT
TTACGATATTTTGATGGAGGCCATTCATCAACATTTGCCACTTTTACATCGTTATATTGAACTACGCAAGAAAATTTTAG
GAATTTCTGATTTAAAGATGTATGATATCTATACTCCATTATCTAATTTAGATTATAAATTTAACTATGAAGATGGAGTG
AAAAAAGCAGAAGAAGTTTTAGCGATATTTGGTAAAGAATATAAAGAAAAAGTTAAAGTAGCTTTTGAACAAAGATGGAT
TGATGTCGAAGAAAATATCGGAAAACGTTCGGGTGCTTATTCAGGTGGATCTTATGATACCAATGCTTTTATGCTTCTCA
ATTGGCAAGAAACATTAGATGATCTTTTTACTTTAGTTCATGAAATGGGGCACTCAATGCATAGTGCTTTCACACGTGAA
AGCCAACCTTATGTTTATGGGGATTATCCAATCTTTTTAGCTGAAATTGCCTCAACCACAAATGAAAATATTTTAACTGA
AACTTTATTAAAGGAAAGTAAAGATGATAAAGAGCGCTTCGCTCTTTTGAACCACTGGCTTGATAGTTTCCGTGGGACTG
TTTTCCGTCAGAGTCAATTTGCCGAATTTGAACAAAAAATTCATGAAGCAGATGCTGCCGGCGAAGTTTTAACAAGTGAA
TACTTAAACTCACTTTATGGCGAAATAAATGAAAAATACTATAATTTAGCAGCCAAAGAAAATCCGGAAATTCAGTATGA
ATGGGCTAGAATTCCGCATTTTTATTATAATTTCTATGTTTTTCAATACGCAACAGGTTTTGCTGCGGCAACTTTCTTAG
CTGAAAAAGTTGTTCATGGTTCAGATGAGGATCGTCAAAAATATCTTGAATATTTGAAGGCAGGTTCCTCAGCTTTTCCT
TTAGAAGTAATTGCCAAAGCTGGAGTTGATATGGAATCTAGTGATTACTTAGACGCCGCCTTTGAGCTTTTTGAAAATCG
ATTGAGTGAATTAGAAAAATTAGTTGAAAAAGGAGTCCATCTTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-582)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

63.727

100

0.637