Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   V9Z34_RS01960 Genome accession   NZ_CP146653
Coordinates   421991..422458 (-) Length   155 a.a.
NCBI ID   WP_000340171.1    Uniprot ID   -
Organism   Escherichia coli strain MS 119-7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 416991..427458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9Z34_RS01935 (V9Z34_01935) rpsG 417132..417602 (+) 471 WP_001138043.1 30S ribosomal protein S7 -
  V9Z34_RS01940 (V9Z34_01940) fusA 417699..419813 (+) 2115 WP_000124700.1 elongation factor G -
  V9Z34_RS01945 (V9Z34_01945) tuf 419884..421068 (+) 1185 WP_000031783.1 elongation factor Tu -
  V9Z34_RS01950 (V9Z34_01950) bfd 421251..421445 (+) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  V9Z34_RS01955 (V9Z34_01955) bfr 421518..421994 (+) 477 WP_000675515.1 bacterioferritin -
  V9Z34_RS01960 (V9Z34_01960) pilD 421991..422458 (-) 468 WP_000340171.1 A24 family peptidase Machinery gene
  V9Z34_RS01965 (V9Z34_01965) rpsJ 422837..423148 (+) 312 WP_001181004.1 30S ribosomal protein S10 -
  V9Z34_RS01970 (V9Z34_01970) rplC 423181..423810 (+) 630 WP_000579833.1 50S ribosomal protein L3 -
  V9Z34_RS01975 (V9Z34_01975) rplD 423821..424426 (+) 606 WP_000424395.1 50S ribosomal protein L4 -
  V9Z34_RS01980 (V9Z34_01980) rplW 424423..424725 (+) 303 WP_000617544.1 50S ribosomal protein L23 -
  V9Z34_RS01985 (V9Z34_01985) rplB 424743..425564 (+) 822 WP_000301864.1 50S ribosomal protein L2 -
  V9Z34_RS01990 (V9Z34_01990) rpsS 425581..425859 (+) 279 WP_001138117.1 30S ribosomal protein S19 -
  V9Z34_RS01995 (V9Z34_01995) rplV 425874..426206 (+) 333 WP_000447529.1 50S ribosomal protein L22 -
  V9Z34_RS02000 (V9Z34_02000) rpsC 426224..426925 (+) 702 WP_000529945.1 30S ribosomal protein S3 -
  V9Z34_RS02005 (V9Z34_02005) rplP 426938..427348 (+) 411 WP_000941212.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 16938.08 Da        Isoelectric Point: 8.1296

>NTDB_id=856106 V9Z34_RS01960 WP_000340171.1 421991..422458(-) (pilD) [Escherichia coli strain MS 119-7]
MDATLPFLILYACLSVLLFLWDAKHGLLPDRFTCPLLWSGLLFSQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVVGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=856106 V9Z34_RS01960 WP_000340171.1 421991..422458(-) (pilD) [Escherichia coli strain MS 119-7]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCTGTCCTACTTTTTTTATGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTCTCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACCTGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTGTTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGTTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(10-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.8

80.645

0.361
  pilD Neisseria gonorrhoeae MS11

38.095

94.839

0.361