Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   Q0F97_RS09180 Genome accession   NZ_CP129878
Coordinates   1887137..1888954 (-) Length   605 a.a.
NCBI ID   WP_014124072.1    Uniprot ID   A0AAN1VR64
Organism   Tetragenococcus halophilus strain H2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1882137..1893954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q0F97_RS09155 (Q0F97_09140) mgtE 1882452..1883816 (-) 1365 WP_041591768.1 magnesium transporter -
  Q0F97_RS09160 (Q0F97_09145) - 1883822..1884724 (-) 903 WP_014124076.1 RluA family pseudouridine synthase -
  Q0F97_RS09165 (Q0F97_09150) - 1884859..1885665 (-) 807 WP_041591767.1 NAD kinase -
  Q0F97_RS09170 (Q0F97_09155) - 1885658..1886332 (-) 675 WP_014124074.1 GTP pyrophosphokinase family protein -
  Q0F97_RS09175 (Q0F97_09160) - 1886488..1887063 (+) 576 WP_252922654.1 CYTH domain-containing protein -
  Q0F97_RS09180 (Q0F97_09165) pepF 1887137..1888954 (-) 1818 WP_014124072.1 oligoendopeptidase F Regulator
  Q0F97_RS09185 (Q0F97_09170) - 1889043..1890011 (-) 969 WP_014124071.1 competence protein CoiA family protein -
  Q0F97_RS09190 (Q0F97_09175) - 1890122..1890838 (-) 717 WP_014124070.1 adaptor protein MecA -
  Q0F97_RS09195 (Q0F97_09180) spxA 1890987..1891385 (-) 399 WP_014124069.1 transcriptional regulator SpxA -
  Q0F97_RS09200 (Q0F97_09185) - 1891545..1893260 (-) 1716 WP_014124068.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69922.90 Da        Isoelectric Point: 4.7122

>NTDB_id=856098 Q0F97_RS09180 WP_014124072.1 1887137..1888954(-) (pepF) [Tetragenococcus halophilus strain H2]
MSEAKKLPKRDEVAENLTWDLTKIFKDDQAFEKAFSALQEKLQYADSYRGTLGDGPQAFLAAFEYLLDVSRQLETVYVYS
HLKNDQDTSNTTYQALNSRAESLVTQADEKLSFFEPELLSLSDEKIWQYFKDEPKLEIYRHFVDQIVANRAHVLPKEQEA
LLAGAGEIFGASSNTFSIMNNADFVFPVIEDENGEKVQLSHGVYGQLMESTDRLVRENAFKGLYSVYKQFANTLASTLNS
HIKTHNYQAKVRHYHSAREAALSSNHIPETVYDHLVDVVNKNLNLLHRYMGLRKRLLQVENLHMYDVYTPLLGEAPISFT
YDQAVEKAFEALAPMGEEYLSVVKKAFDERWIDVVENQGKRSGAYSSGTYDTNPYILLNWHDTLDHLFTLVHEMGHSVHS
YFTQNNQPYVYGDYSIFLAEIASTTNENILTEHLLQTENDPRVRAYVLNHYLDGFKGTVFRQTQFAEFEHFMHTEDAKGT
PLTSEFLNEHYGELNRRYYGDEMEDDPEIHLEWSRIPHFYYNYYVFQYATGFSAASALSQKILSEDSSALDRYLTYLKSG
DSDYPIEVMKKAGVDMTKSDYLEDAMHVFEERLNELELLVDELEK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=856098 Q0F97_RS09180 WP_014124072.1 1887137..1888954(-) (pepF) [Tetragenococcus halophilus strain H2]
ATGTCAGAAGCTAAAAAATTACCTAAACGAGACGAAGTGGCAGAAAATTTGACTTGGGATTTAACAAAAATCTTTAAAGA
TGACCAAGCATTTGAAAAAGCTTTTAGCGCGCTACAAGAAAAACTGCAATATGCCGATTCCTATAGAGGAACCCTAGGGG
ACGGGCCACAAGCATTTTTAGCTGCATTTGAATATTTATTAGATGTTTCTCGTCAATTAGAGACTGTCTATGTTTATAGC
CATTTAAAAAATGACCAGGATACTTCAAATACAACTTACCAAGCGCTTAATTCTAGAGCAGAATCTTTGGTAACACAAGC
AGATGAAAAATTATCTTTTTTTGAACCCGAATTATTATCGTTAAGTGATGAAAAGATTTGGCAATATTTTAAAGACGAAC
CAAAACTTGAAATTTATCGGCATTTTGTCGATCAAATCGTAGCAAATCGTGCCCACGTTTTGCCAAAAGAACAAGAAGCT
TTATTAGCAGGCGCTGGAGAGATCTTTGGTGCTTCTAGCAACACTTTTTCTATTATGAACAATGCTGATTTTGTTTTTCC
TGTCATTGAAGATGAAAATGGAGAAAAAGTACAGCTCTCTCATGGTGTTTATGGACAATTAATGGAAAGCACTGACCGTT
TAGTGCGTGAGAATGCTTTTAAAGGTCTATATAGTGTATACAAGCAGTTTGCCAACACCCTTGCCTCTACACTGAATTCA
CATATTAAAACACATAATTATCAAGCAAAAGTGCGCCATTACCATTCAGCTAGAGAAGCTGCCTTATCAAGCAACCATAT
TCCAGAAACAGTTTATGATCATTTAGTAGATGTGGTCAATAAAAACTTAAACCTTCTTCATCGTTATATGGGACTTAGGA
AGCGTTTATTACAAGTGGAAAATTTGCATATGTATGATGTTTACACGCCACTTTTAGGTGAAGCGCCTATTAGTTTTACT
TATGACCAGGCGGTAGAAAAAGCGTTTGAAGCACTAGCTCCTATGGGAGAAGAGTATTTAAGTGTCGTGAAAAAGGCCTT
TGATGAACGTTGGATCGATGTTGTAGAAAACCAAGGAAAACGTAGTGGCGCTTATTCTTCAGGTACTTATGATACCAATC
CTTATATTTTATTAAATTGGCATGATACACTGGACCATTTATTTACCTTGGTACATGAAATGGGGCACAGTGTTCATAGC
TACTTTACCCAAAATAATCAACCTTATGTATATGGTGATTATTCAATTTTCTTAGCAGAGATTGCTTCAACTACCAATGA
AAATATCTTGACTGAACATCTTTTACAAACAGAAAATGACCCACGTGTTCGGGCATATGTATTAAATCACTATTTAGACG
GGTTTAAAGGTACAGTCTTTCGTCAAACACAATTTGCGGAGTTTGAGCATTTTATGCACACTGAAGACGCTAAAGGTACA
CCATTAACAAGTGAGTTTTTAAATGAGCATTATGGAGAGTTGAATAGACGATATTACGGTGATGAAATGGAAGATGACCC
AGAAATACATCTTGAATGGTCGCGCATTCCTCATTTTTATTATAATTACTATGTGTTCCAATATGCGACAGGTTTTTCTG
CTGCTTCTGCTTTGTCTCAAAAAATCTTATCCGAAGACTCGAGTGCTTTGGATCGTTATTTGACCTATCTAAAATCTGGA
GATAGTGATTATCCTATTGAAGTGATGAAAAAAGCTGGAGTGGATATGACAAAATCGGATTATTTAGAAGATGCGATGCA
TGTTTTTGAAGAACGGTTAAATGAGTTAGAACTACTCGTTGATGAATTAGAAAAATGA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-186)

Peptidase family M3 (Peptidase_M3)

(207-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

54.806

98.017

0.537