Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V8961_RS04215 Genome accession   NZ_CP146585
Coordinates   623085..623714 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain A1.S1.160     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 618085..628714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8961_RS04195 (V8961_04195) ycbZ 618486..620246 (-) 1761 WP_000156518.1 Lon protease family protein -
  V8961_RS04200 (V8961_04200) matP 620432..620884 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  V8961_RS04205 (V8961_04205) ompA 620960..622000 (-) 1041 WP_000750416.1 porin OmpA -
  V8961_RS04210 (V8961_04210) sulA 622357..622866 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  V8961_RS04215 (V8961_04215) sxy/tfoX 623085..623714 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V8961_RS04220 (V8961_04220) yccS 623677..625839 (-) 2163 WP_000875061.1 YccS family putative transporter -
  V8961_RS04225 (V8961_04225) yccF 625849..626295 (-) 447 WP_001261235.1 YccF domain-containing protein -
  V8961_RS04230 (V8961_04230) helD 626418..628472 (+) 2055 WP_053263464.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=855682 V8961_RS04215 WP_000839153.1 623085..623714(+) (sxy/tfoX) [Escherichia coli strain A1.S1.160]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=855682 V8961_RS04215 WP_000839153.1 623085..623714(+) (sxy/tfoX) [Escherichia coli strain A1.S1.160]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1