Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   V8955_RS24375 Genome accession   NZ_CP146564
Coordinates   4919610..4920239 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain B1.H1.18     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4914610..4925239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8955_RS24355 (V8955_24355) ycbZ 4915012..4916772 (-) 1761 WP_000156482.1 Lon protease family protein -
  V8955_RS24360 (V8955_24360) matP 4916958..4917410 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  V8955_RS24365 (V8955_24365) ompA 4917486..4918526 (-) 1041 WP_001309394.1 porin OmpA -
  V8955_RS24370 (V8955_24370) sulA 4918882..4919391 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  V8955_RS24375 (V8955_24375) sxy/tfoX 4919610..4920239 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  V8955_RS24380 (V8955_24380) yccS 4920202..4922364 (-) 2163 WP_000875041.1 YccS family putative transporter -
  V8955_RS24385 (V8955_24385) yccF 4922374..4922820 (-) 447 WP_001261235.1 YccF domain-containing protein -
  V8955_RS24390 (V8955_24390) helD 4922943..4924997 (+) 2055 WP_001305911.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=855592 V8955_RS24375 WP_000839153.1 4919610..4920239(+) (sxy/tfoX) [Escherichia coli strain B1.H1.18]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=855592 V8955_RS24375 WP_000839153.1 4919610..4920239(+) (sxy/tfoX) [Escherichia coli strain B1.H1.18]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1