Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FIA76_RS09740 Genome accession   NZ_CP146515
Coordinates   1795726..1796355 (-) Length   209 a.a.
NCBI ID   WP_096695859.1    Uniprot ID   -
Organism   Escherichia coli strain MDP9-27     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1790726..1801355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIA76_RS09725 (FIA76_009725) helD 1790968..1793022 (-) 2055 WP_001315388.1 DNA helicase IV -
  FIA76_RS09730 (FIA76_009730) yccF 1793145..1793591 (+) 447 WP_001261235.1 YccF domain-containing protein -
  FIA76_RS09735 (FIA76_009735) yccS 1793601..1795763 (+) 2163 WP_000875044.1 YccS family putative transporter -
  FIA76_RS09740 (FIA76_009740) sxy/tfoX 1795726..1796355 (-) 630 WP_096695859.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  FIA76_RS09745 (FIA76_009745) sulA 1796574..1797083 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  FIA76_RS09750 (FIA76_009750) ompA 1797440..1798492 (+) 1053 WP_000750419.1 porin OmpA -
  FIA76_RS09755 (FIA76_009755) matP 1798567..1799019 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  FIA76_RS09760 (FIA76_009760) ycbZ 1799205..1800965 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.01 Da        Isoelectric Point: 9.2180

>NTDB_id=855368 FIA76_RS09740 WP_096695859.1 1795726..1796355(-) (sxy/tfoX) [Escherichia coli strain MDP9-27]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDASLKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=855368 FIA76_RS09740 WP_096695859.1 1795726..1796355(-) (sxy/tfoX) [Escherichia coli strain MDP9-27]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCATCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995