Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   FIA75_RS07085 Genome accession   NZ_CP146512
Coordinates   1276997..1278430 (-) Length   477 a.a.
NCBI ID   WP_000809051.1    Uniprot ID   A0A0H2VDV8
Organism   Escherichia coli strain EH53     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1271997..1283430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIA75_RS07050 (FIA75_07055) elbB 1272689..1273342 (+) 654 WP_001299134.1 isoprenoid biosynthesis glyoxalase ElbB -
  FIA75_RS07055 (FIA75_07060) mtgA 1273339..1274067 (+) 729 WP_000047091.1 monofunctional biosynthetic peptidoglycan transglycosylase -
  FIA75_RS07060 (FIA75_07065) yrbL 1274064..1274696 (-) 633 WP_000620387.1 PhoP regulatory network protein YrbL -
  FIA75_RS07065 (FIA75_07070) npr 1274909..1275181 (-) 273 WP_000216791.1 PTS phosphocarrier protein NPr -
  FIA75_RS07070 (FIA75_07075) rapZ 1275178..1276032 (-) 855 WP_000243741.1 RNase adapter RapZ -
  FIA75_RS07075 (FIA75_07080) ptsN 1276078..1276569 (-) 492 WP_000183676.1 PTS IIA-like nitrogen regulatory protein PtsN -
  FIA75_RS07080 (FIA75_07085) hpf 1276687..1276974 (-) 288 WP_001176599.1 ribosome hibernation promoting factor -
  FIA75_RS07085 (FIA75_07090) rpoN/rpoN1 1276997..1278430 (-) 1434 WP_000809051.1 RNA polymerase factor sigma-54 Machinery gene
  FIA75_RS07090 (FIA75_07095) lptB 1278478..1279203 (-) 726 WP_000224099.1 LPS export ABC transporter ATP-binding protein -
  FIA75_RS07095 (FIA75_07100) lptA 1279210..1279767 (-) 558 WP_000669787.1 lipopolysaccharide ABC transporter substrate-binding protein LptA -
  FIA75_RS07100 (FIA75_07105) lptC 1279736..1280311 (-) 576 WP_000030537.1 LPS export ABC transporter periplasmic protein LptC -
  FIA75_RS07105 (FIA75_07110) kdsC 1280308..1280874 (-) 567 WP_000030005.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  FIA75_RS07110 (FIA75_07115) kdsD 1280895..1281881 (-) 987 WP_001295557.1 arabinose-5-phosphate isomerase KdsD -
  FIA75_RS07115 (FIA75_07120) yrbG 1281895..1282872 (-) 978 WP_000922872.1 calcium/sodium antiporter -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53993.79 Da        Isoelectric Point: 4.3639

>NTDB_id=855298 FIA75_RS07085 WP_000809051.1 1276997..1278430(-) (rpoN/rpoN1) [Escherichia coli strain EH53]
MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRETQDSETLDTADALEQKEMPE
ELPLDASWDTIYTAGTPSGTSGDYIDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVPLED
ILESMGDEEIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTTPWLEEARLIISDHLDLLANHDFRTLMRVTR
LKEDVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDVLVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIR
SNLQDAKWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHSPRGIFELK
YFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQGIMVARRTVAKYRESLSIPPSNQRKQLV

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=855298 FIA75_RS07085 WP_000809051.1 1276997..1278430(-) (rpoN/rpoN1) [Escherichia coli strain EH53]
ATGAAGCAAGGTTTGCAACTCAGGCTTAGCCAACAACTGGCGATGACGCCACAGCTCCAACAGGCAATTCGTCTGTTGCA
GTTGTCGACGCTGGAACTTCAGCAGGAGCTACAGCAGGCGCTGGAGAGTAATCCGCTGCTTGAGCAAATCGACACTCATG
AAGAAATCGACACCCGCGAAACGCAAGACAGTGAAACGCTGGACACCGCCGACGCGCTCGAACAAAAAGAGATGCCGGAA
GAGCTGCCGCTCGATGCCAGTTGGGACACCATTTACACCGCTGGTACACCATCCGGCACCAGCGGTGACTACATTGACGA
TGAGCTGCCGGTCTATCAGGGCGAAACGACGCAGACCTTGCAGGATTACCTGATGTGGCAGGTCGAGCTGACACCGTTTT
CCGACACTGACCGCGCTATTGCTACCTCTATCGTCGATGCCGTTGATGACACCGGTTATCTGACTGTCCCGCTGGAAGAT
ATTCTCGAAAGTATGGGCGATGAAGAGATCGACATCGACGAGGTTGAAGCCGTCCTTAAGCGGATCCAACGGTTTGATCC
GGTCGGTGTAGCGGCAAAAGATCTGCGTGACTGCCTGCTAATCCAACTCTCCCAATTCGATAAAACCACGCCGTGGCTGG
AAGAGGCCAGACTGATCATTAGCGATCATCTCGATCTGTTAGCCAATCACGACTTCCGCACTTTAATGCGCGTCACGCGT
CTGAAAGAAGATGTGCTGAAAGAAGCCGTCAATCTGATCCAGTCGCTCGATCCGCGCCCCGGGCAGTCGATCCAGACTGG
CGAACCTGAGTATGTCATTCCAGATGTGCTGGTGCGTAAGCATAACGGTCACTGGACGGTAGAACTCAACAGTGACAGCA
TTCCGCGTCTGCAAATCAACCAGCACTACGCCTCGATGTGCAATAACGCGCGCAACGATGGTGACAGCCAGTTTATCCGC
AGCAATCTGCAGGATGCCAAATGGTTGATCAAGAGTCTGGAAAGCCGTAACGATACGCTACTGCGCGTGAGTCGCTGTAT
CGTTGAACAGCAGCAAGCCTTCTTTGAGCAAGGTGAAGAATATATGAAACCGATGGTACTGGCCGATATCGCCCAGGCTG
TCGAAATGCATGAATCGACGATATCTCGCGTGACCACGCAAAAATACCTGCATAGTCCACGAGGCATTTTTGAACTGAAG
TATTTCTTTTCCAGTCACGTCAATACCGAGGGCGGCGGCGAAGCTTCCTCCACGGCGATTCGTGCGCTGGTGAAGAAATT
AATCGCGGCGGAAAACCCAGCGAAACCGTTGAGCGACAGCAAGTTAACCTCTTTGCTGTCGGAACAAGGTATCATGGTGG
CACGCCGCACTGTTGCGAAGTACCGAGAGTCTTTATCCATTCCGCCGTCAAACCAGCGTAAACAGCTCGTTTGA

Domains

Predicted by InterProScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(317-475)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2VDV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

44.223

100

0.465