Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FIA71_RS00445 Genome accession   NZ_CP146507
Coordinates   96181..96810 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 10     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 91181..101810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FIA71_RS00425 (FIA71_000425) ycbZ 91571..93331 (-) 1761 WP_000156526.1 Lon protease family protein -
  FIA71_RS00430 (FIA71_000430) matP 93517..93969 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  FIA71_RS00435 (FIA71_000435) ompA 94044..95096 (-) 1053 WP_000750419.1 porin OmpA -
  FIA71_RS00440 (FIA71_000440) sulA 95453..95962 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  FIA71_RS00445 (FIA71_000445) sxy/tfoX 96181..96810 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  FIA71_RS00450 (FIA71_000450) yccS 96773..98935 (-) 2163 WP_000875044.1 YccS family putative transporter -
  FIA71_RS00455 (FIA71_000455) yccF 98945..99391 (-) 447 WP_001261235.1 YccF domain-containing protein -
  FIA71_RS00460 (FIA71_000460) helD 99514..101568 (+) 2055 WP_001315388.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=855190 FIA71_RS00445 WP_000839153.1 96181..96810(+) (sxy/tfoX) [Escherichia coli strain 10]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=855190 FIA71_RS00445 WP_000839153.1 96181..96810(+) (sxy/tfoX) [Escherichia coli strain 10]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1