Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   V8690_RS34755 Genome accession   NZ_CP146350
Coordinates   7464437..7465114 (+) Length   225 a.a.
NCBI ID   WP_338784034.1    Uniprot ID   -
Organism   Streptomyces sp. DG1A-41     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7459437..7470114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8690_RS34725 (V8690_34725) - 7459631..7460374 (-) 744 WP_338784029.1 SDR family oxidoreductase -
  V8690_RS34730 (V8690_34730) - 7460549..7461175 (+) 627 WP_338784030.1 dihydrofolate reductase family protein -
  V8690_RS34735 (V8690_34735) - 7461328..7461723 (+) 396 WP_338784031.1 ribonuclease domain-containing protein -
  V8690_RS34740 (V8690_34740) - 7461772..7461972 (-) 201 WP_031106532.1 hypothetical protein -
  V8690_RS34745 (V8690_34745) - 7462210..7463427 (+) 1218 WP_338785553.1 histidine kinase -
  V8690_RS34750 (V8690_34750) - 7463809..7464087 (+) 279 WP_338784033.1 hypothetical protein -
  V8690_RS34755 (V8690_34755) vraR 7464437..7465114 (+) 678 WP_338784034.1 response regulator transcription factor Regulator
  V8690_RS34760 (V8690_34760) - 7465134..7466156 (-) 1023 WP_338784035.1 Gfo/Idh/MocA family oxidoreductase -
  V8690_RS34765 (V8690_34765) - 7466285..7467022 (+) 738 WP_338785554.1 GntR family transcriptional regulator -
  V8690_RS34770 (V8690_34770) - 7467167..7468315 (+) 1149 WP_338784036.1 ROK family glucokinase -
  V8690_RS34775 (V8690_34775) - 7468312..7468893 (+) 582 WP_338784037.1 sugar kinase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24178.75 Da        Isoelectric Point: 5.1573

>NTDB_id=855182 V8690_RS34755 WP_338784034.1 7464437..7465114(+) (vraR) [Streptomyces sp. DG1A-41]
MTAIRLLLVDDDPLVRAGLSFMMGGADDIEIVGEAADGGEVEALVDRTRPDVVLMDIRMPTVDGLTATERLRAREDAPQV
VVLTTFHADEQVLRALRAGAAGFVLKDTPPTEILGAVRRVAAGDPVLSPTVTRQLMRHAVGTAADTRRTRARARMAALND
REREVAVAVGRGLSNAEIATGLFMSVATVKTHVSRILAKLDLNNRVQIALLAYDAGLLEEEQEGH

Nucleotide


Download         Length: 678 bp        

>NTDB_id=855182 V8690_RS34755 WP_338784034.1 7464437..7465114(+) (vraR) [Streptomyces sp. DG1A-41]
ATGACTGCGATCAGACTGCTCCTCGTCGACGACGACCCGCTGGTGCGGGCCGGACTGTCCTTCATGATGGGCGGAGCCGA
CGACATCGAGATCGTCGGCGAGGCGGCCGACGGCGGCGAGGTGGAGGCGCTCGTCGACCGCACCCGCCCGGACGTCGTGC
TCATGGACATCCGGATGCCTACGGTGGACGGTCTCACGGCCACGGAGCGGCTGCGCGCCCGCGAGGACGCCCCGCAGGTG
GTGGTCCTCACCACCTTCCACGCCGACGAACAGGTCCTGCGGGCGCTGCGCGCGGGCGCCGCCGGATTCGTCCTCAAGGA
CACCCCGCCGACCGAGATCCTCGGCGCGGTACGCCGGGTCGCGGCCGGCGACCCGGTCCTGTCGCCCACCGTCACCCGTC
AGTTGATGCGGCACGCGGTCGGCACCGCCGCCGACACCCGTCGTACACGCGCGCGTGCCCGCATGGCCGCCCTCAACGAC
CGCGAGCGCGAGGTCGCCGTCGCGGTCGGCCGGGGCCTGTCCAACGCCGAGATCGCCACCGGCCTCTTCATGAGCGTCGC
CACCGTCAAGACGCACGTCTCGCGCATCCTGGCCAAGCTCGACCTCAACAACCGCGTGCAGATCGCGCTGCTGGCGTACG
ACGCGGGTCTGCTGGAGGAGGAACAGGAGGGCCACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(7-117)

Bacterial regulatory proteins, luxR family (GerE)

(157-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.356

97.333

0.373