Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WHT_RS10030 Genome accession   NZ_AP024504
Coordinates   1936520..1936807 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain HT18     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1931520..1941807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHT_RS10010 - 1932692..1932889 (+) 198 WP_001048104.1 DUF4083 domain-containing protein -
  WHT_RS10015 (WHT_c20090) - 1932921..1933382 (+) 462 WP_000024999.1 NUDIX hydrolase -
  WHT_RS10020 (WHT_c20100) nadE 1933432..1934250 (-) 819 WP_000174901.1 ammonia-dependent NAD(+) synthetase -
  WHT_RS10025 (WHT_c20110) - 1934521..1936401 (+) 1881 WP_065382526.1 ABC transporter permease -
  WHT_RS10030 (WHT_c20120) abrB 1936520..1936807 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  WHT_RS10035 (WHT_c20130) - 1937083..1938030 (+) 948 WP_000099762.1 serine protease -
  WHT_RS10040 (WHT_c20140) - 1938073..1938381 (-) 309 WP_001259909.1 helix-turn-helix transcriptional regulator -
  WHT_RS10045 (WHT_c20150) - 1938488..1939423 (+) 936 WP_065382319.1 aldo/keto reductase -
  WHT_RS10050 (WHT_c20160) - 1939471..1940646 (+) 1176 WP_001082489.1 MFS transporter -
  WHT_RS29235 (WHT_c20170) - 1940695..1940901 (+) 207 WP_001101741.1 hypothetical protein -
  WHT_RS10055 (WHT_c20180) - 1941045..1941407 (+) 363 WP_001198796.1 DUF805 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=85517 WHT_RS10030 WP_000648324.1 1936520..1936807(+) (abrB) [Bacillus cereus strain HT18]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=85517 WHT_RS10030 WP_000648324.1 1936520..1936807(+) (abrB) [Bacillus cereus strain HT18]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAGCAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment