Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   V8690_RS28060 Genome accession   NZ_CP146350
Coordinates   5994761..5995819 (+) Length   352 a.a.
NCBI ID   WP_338782853.1    Uniprot ID   -
Organism   Streptomyces sp. DG1A-41     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 5989761..6000819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8690_RS28045 (V8690_28045) - 5991078..5992718 (+) 1641 WP_338782850.1 ABC transporter substrate-binding protein -
  V8690_RS28050 (V8690_28050) - 5992862..5993788 (+) 927 WP_338782851.1 ABC transporter permease -
  V8690_RS28055 (V8690_28055) - 5993781..5994749 (+) 969 WP_338782852.1 ABC transporter permease -
  V8690_RS28060 (V8690_28060) amiE 5994761..5995819 (+) 1059 WP_338782853.1 ABC transporter ATP-binding protein Regulator
  V8690_RS28065 (V8690_28065) - 5995812..5996960 (+) 1149 WP_338782854.1 dipeptide ABC transporter ATP-binding protein -
  V8690_RS28070 (V8690_28070) - 5997025..5997413 (+) 389 Protein_5529 VOC family protein -
  V8690_RS28075 (V8690_28075) - 5997563..5999686 (-) 2124 WP_338782856.1 prolyl oligopeptidase family serine peptidase -
  V8690_RS28080 (V8690_28080) - 5999867..6000061 (+) 195 WP_338782857.1 hypothetical protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38329.16 Da        Isoelectric Point: 6.5013

>NTDB_id=855163 V8690_RS28060 WP_338782853.1 5994761..5995819(+) (amiE) [Streptomyces sp. DG1A-41]
MTTIEETRDVPEPRGSAGGDVPLLEVRDLHVEFHTRDGVAKAVNGVNYTVSSGETLAVLGESGSGKSVTAQAIMGILDMP
PGRIPQGQILYRGEDMLTMSGDARRRIRGSKIAMIFQDALSSLNPVLSVGYQLGEMFRVHQGLSKKDAKAKAIELMDRVK
IPAAKERVGDYPHQFSGGMRQRIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQREYNMGLILITHDLGVVAD
VADKIAVMYAGRIVETAPVHELYKRPAHPYTKGLLESIPRLDQKGQDLYAIKGLPPNLTRIPSGCAFNPRCPQAQDICRT
DVPPLHPVAERDGGELVGRGSACHFWKETIHG

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=855163 V8690_RS28060 WP_338782853.1 5994761..5995819(+) (amiE) [Streptomyces sp. DG1A-41]
GTGACCACCATCGAAGAGACCCGTGACGTGCCCGAGCCGCGAGGCTCGGCCGGGGGCGACGTCCCCCTGCTCGAAGTGCG
CGATCTGCACGTCGAGTTCCACACCCGCGACGGCGTGGCCAAGGCCGTCAACGGCGTCAACTACACCGTGAGCTCCGGCG
AGACCCTCGCCGTGCTCGGCGAGTCCGGCTCCGGCAAGTCCGTGACCGCCCAGGCGATCATGGGCATCCTCGACATGCCG
CCCGGGCGGATCCCCCAGGGCCAGATCCTGTACCGGGGCGAGGACATGCTGACCATGTCCGGCGACGCCCGGCGCCGGAT
CCGGGGCAGCAAGATCGCGATGATCTTCCAGGACGCGCTGTCCTCGCTGAACCCGGTGCTGTCCGTCGGCTACCAGCTCG
GCGAGATGTTCCGCGTCCACCAGGGCCTGAGCAAGAAGGACGCCAAGGCCAAGGCGATCGAGCTGATGGACCGCGTGAAG
ATCCCGGCCGCGAAGGAACGCGTCGGCGACTATCCGCACCAGTTCTCCGGCGGTATGCGCCAGCGCATCATGATCGCGAT
GGCGCTCGCCCTGGAGCCGGACCTGATCATCGCCGACGAGCCGACCACGGCCCTCGACGTGACGGTCCAGGCCCAGGTCA
TGGACCTGCTCGCGGAGCTCCAGCGCGAGTACAACATGGGCCTGATCCTGATCACCCACGACCTCGGCGTCGTCGCCGAC
GTCGCGGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTGGAGACGGCCCCGGTGCACGAGCTGTACAAGCGGCCCGC
GCACCCCTACACCAAGGGTCTGCTCGAGTCGATCCCGCGCCTGGACCAGAAGGGCCAGGACCTGTACGCGATCAAGGGCC
TGCCGCCCAACCTGACCCGTATCCCGTCCGGTTGCGCCTTCAACCCGCGCTGCCCGCAGGCGCAGGACATCTGCCGTACG
GACGTCCCGCCCCTGCACCCGGTCGCCGAGCGGGACGGCGGCGAGCTCGTCGGCCGCGGCAGCGCGTGCCACTTCTGGAA
GGAGACGATCCATGGCTGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(254-318)

ABC transporter (ABC_tran)

(44-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

50.645

88.068

0.446
  amiE Streptococcus thermophilus LMG 18311

49.838

87.784

0.437
  amiE Streptococcus thermophilus LMD-9

49.838

87.784

0.437
  oppD Streptococcus mutans UA159

47.403

87.5

0.415