Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   V8690_RS19690 Genome accession   NZ_CP146350
Coordinates   4238679..4239350 (+) Length   223 a.a.
NCBI ID   WP_338780672.1    Uniprot ID   -
Organism   Streptomyces sp. DG1A-41     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4233679..4244350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8690_RS19670 (V8690_19670) - 4235051..4235620 (-) 570 WP_338780667.1 GNAT family N-acetyltransferase -
  V8690_RS19675 (V8690_19675) - 4235715..4236635 (+) 921 WP_338780668.1 ABC transporter ATP-binding protein -
  V8690_RS19680 (V8690_19680) - 4236632..4237411 (+) 780 WP_338780670.1 ABC transporter permease -
  V8690_RS19685 (V8690_19685) - 4237436..4238682 (+) 1247 Protein_3896 histidine kinase -
  V8690_RS19690 (V8690_19690) vraR 4238679..4239350 (+) 672 WP_338780672.1 response regulator transcription factor Regulator

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24142.50 Da        Isoelectric Point: 5.3191

>NTDB_id=855144 V8690_RS19690 WP_338780672.1 4238679..4239350(+) (vraR) [Streptomyces sp. DG1A-41]
MTTVLIADDQPLQRFGSRMLLESQDDMTVVGEAANGSEAVRMAAELHPDVVLMDIRMPGLDGIEATHRITAAGDRTRILI
VTTFDLDEYAYAGLRAGASGFLVKDAQPEELLSGIRAVATGDAVVAPSLTRRLLDAYVHHLPTGPATEASPHEDPRLASL
TDREREILTVIAKGWTNTEIATRLHLAESTVKTHVGRILAKTGSRDRIQAVILAYDTKLVQPS

Nucleotide


Download         Length: 672 bp        

>NTDB_id=855144 V8690_RS19690 WP_338780672.1 4238679..4239350(+) (vraR) [Streptomyces sp. DG1A-41]
GTGACCACGGTCCTCATCGCCGACGACCAGCCCCTCCAGCGATTCGGCTCCCGCATGCTCCTGGAGAGCCAGGACGACAT
GACGGTCGTCGGCGAGGCGGCGAACGGCAGTGAAGCAGTCCGCATGGCGGCAGAACTGCACCCCGACGTCGTCCTCATGG
ACATCCGCATGCCCGGCCTGGACGGCATCGAGGCGACCCACCGCATCACCGCCGCCGGCGACCGCACGCGCATCCTGATC
GTCACCACCTTCGACCTGGACGAGTACGCCTACGCCGGCCTCCGCGCAGGCGCCTCCGGCTTCCTCGTCAAGGACGCCCA
GCCCGAGGAACTCCTCTCCGGCATCCGCGCGGTGGCCACCGGCGACGCCGTCGTCGCCCCCAGCCTGACCCGCCGCCTCC
TCGACGCCTACGTCCACCACCTGCCGACCGGCCCGGCTACGGAAGCCTCGCCCCATGAGGACCCACGCCTGGCTTCCCTC
ACCGACCGGGAACGCGAAATCCTCACCGTCATCGCCAAGGGCTGGACGAACACGGAGATAGCCACCCGCCTCCACCTGGC
CGAGTCGACGGTGAAAACACACGTGGGCCGCATCCTCGCGAAGACCGGCTCCCGCGACCGCATTCAGGCGGTGATCCTGG
CGTACGACACGAAGCTGGTACAGCCGTCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)

Bacterial regulatory proteins, luxR family (GerE)

(159-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.156

97.758

0.363